Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_H10
(835 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 3.9
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 3.9
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 3.9
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 3.9
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 3.9
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 3.9
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 3.9
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 3.9
L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein. 31 5.1
BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein. 31 5.1
BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a, sub... 31 5.1
BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a, sub... 31 5.1
AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein. 31 5.1
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein.
Length = 464
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPIPYTNHPR--L*HPFPSI-P*TPY*XEFAPGLKPPLSSXAPSA 704
PP P L P + P P + P + P P + P P APG+ PP S P A
Sbjct: 274 PPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA 333
Query: 705 YLTPSSLGMAKGVSPP 752
P A GV PP
Sbjct: 334 ---PGVHPPAPGVHPP 346
>BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein.
Length = 481
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPIPYTNHPR--L*HPFPSI-P*TPY*XEFAPGLKPPLSSXAPSA 704
PP P L P + P P + P + P P + P P APG+ PP S P A
Sbjct: 274 PPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA 333
Query: 705 YLTPSSLGMAKGVSPP 752
P A GV PP
Sbjct: 334 ---PGVHPPAPGVHPP 346
>BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPIPYTNHPR--L*HPFPSI-P*TPY*XEFAPGLKPPLSSXAPSA 704
PP P L P + P P + P + P P + P P APG+ PP S P A
Sbjct: 274 PPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA 333
Query: 705 YLTPSSLGMAKGVSPP 752
P A GV PP
Sbjct: 334 ---PGVHPPAPGVHPP 346
>BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPIPYTNHPR--L*HPFPSI-P*TPY*XEFAPGLKPPLSSXAPSA 704
PP P L P + P P + P + P P + P P APG+ PP S P A
Sbjct: 274 PPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA 333
Query: 705 YLTPSSLGMAKGVSPP 752
P A GV PP
Sbjct: 334 ---PGVHPPAPGVHPP 346
>AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein.
Length = 464
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPIPYTNHPR--L*HPFPSI-P*TPY*XEFAPGLKPPLSSXAPSA 704
PP P L P + P P + P + P P + P P APG+ PP S P A
Sbjct: 274 PPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA 333
Query: 705 YLTPSSLGMAKGVSPP 752
P A GV PP
Sbjct: 334 ---PGVHPPAPGVHPP 346
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,766,132
Number of Sequences: 237096
Number of extensions: 2556704
Number of successful extensions: 5659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5652
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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