Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_H09
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   130   2e-32
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   130   2e-32

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  130 bits (314), Expect = 2e-32
 Identities = 69/128 (53%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
 Frame = +2

Query: 434 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 613
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 614 TSLCFVYP-STSHVPVSPPMSVREMXSVNXXXXXXXXXXXXXXXGLIGLYXXFGVSVQGI 790
           TSLCFVYP   +   ++  +  +                     G+ GLY  FGVSVQGI
Sbjct: 128 TSLCFVYPLDFARTRLAADVG-KAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGI 186

Query: 791 IIYRASXF 814
           IIYRA+ F
Sbjct: 187 IIYRAAYF 194



 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +1

Query: 232 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 411
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 412 VRIPKEQGSPFILAW 456
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 69.7 bits (163), Expect = 3e-14
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +1

Query: 634 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKFDG 744
           PLDFARTRLAADVGK  G+REF+GLGNC++KIFK DG
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADG 171



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +1

Query: 622 VLRVPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKFDGSD 750
           ++  P D  R R+    G+   +  +    +C + I+K +G +
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGN 270


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  130 bits (314), Expect = 2e-32
 Identities = 69/128 (53%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
 Frame = +2

Query: 434 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 613
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 614 TSLCFVYP-STSHVPVSPPMSVREMXSVNXXXXXXXXXXXXXXXGLIGLYXXFGVSVQGI 790
           TSLCFVYP   +   ++  +  +                     G+ GLY  FGVSVQGI
Sbjct: 128 TSLCFVYPLDFARTRLAADVG-KAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGI 186

Query: 791 IIYRASXF 814
           IIYRA+ F
Sbjct: 187 IIYRAAYF 194



 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +1

Query: 232 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 411
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 412 VRIPKEQGSPFILAW 456
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 69.7 bits (163), Expect = 3e-14
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +1

Query: 634 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKFDG 744
           PLDFARTRLAADVGK  G+REF+GLGNC++KIFK DG
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADG 171



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +1

Query: 622 VLRVPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKFDGSD 750
           ++  P D  R R+    G+   +  +    +C + I+K +G +
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGN 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,042
Number of Sequences: 438
Number of extensions: 3999
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)