Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_H02
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   1.0  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   4.2  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.2  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   5.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   9.7  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   9.7  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 190 LTTRKLAERLGVQQPALYWHFRNKR 264
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 627  VQLCHTTEVRFLHKDPKLAV-FPVTTL*ND 541
            + LCH   +  L  DPKLAV FP  ++ ND
Sbjct: 1109 IALCHNKGIDVLRLDPKLAVGFPSPSVLND 1138


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 354 DRECPQLQAGAARLPPAQWHHVLELQVAAALEYPSRGPSL--RVPSFLVQSGPYSES 518
           D+  P LQ   ++LP  QW  ++ L+   A   P   P +  + P FL      SE+
Sbjct: 699 DQLDPNLQT-LSKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEA 754


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 543 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLER 439
           DG+ ++Y   HY + +++   + V+  PS   LER
Sbjct: 859 DGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILER 893


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 562 WENC*LGIFVKEPYFCGVT*LDKLPTEI*SSKVNIKF*VYNV--LNXLHM 705
           W  C LG+  KE + CG   + KL   I +      F VY    LN LH+
Sbjct: 274 WTQCLLGLQAKEIHLCGEESVVKLVRSI-AKMTQDDFTVYRYERLNPLHV 322


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 294 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQ 205
           H F Q   +   +P++P    ++NP P R+
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR 325


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 234 RLLNPQPFRQFACRQTVYADLVQQVQGGTDHCIRL 130
           R+L+P     F+      AD      GG+D CIRL
Sbjct: 230 RILSPIRSHDFSIETITRADSDSLYVGGSDGCIRL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,556
Number of Sequences: 5004
Number of extensions: 58754
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)