Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_H01
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.33 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 634 GKRTTKPQHFHVPTNHHIKPIEWEDLV-LHGIAMSTNLSGESVL 506
           G+  TKP+ F +PT+  +  IE +  V +  IA S +   E +L
Sbjct: 399 GRLQTKPEGFMIPTHLKVLTIEEKPFVYVREIAFSESCLPEEIL 442


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 659 PQHPSAGHGEAHHEAST---LSRANKPPHQ 579
           P H + GHG +H  A+     S A  P HQ
Sbjct: 414 PHHHTMGHGHSHIHATPHHHHSHAATPHHQ 443


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 9   FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 185
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 186 -RADGTH 203
            +A+  H
Sbjct: 286 YQANNVH 292


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +3

Query: 432 VLDPAQDHQPITEASYVNIPVIALCNTDSP 521
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 542 YPMQHQVFPLYWFDVVVCWHVKVLRL-RGA 628
           +P  ++++P Y+FD  V    + L++ RG+
Sbjct: 159 FPAIYEIYPNYFFDSSVIEEAQNLKMSRGS 188


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 542 YPMQHQVFPLYWFDVVVCWHVKVLRL-RGA 628
           +P  ++++P Y+FD  V    + L++ RG+
Sbjct: 159 FPAIYEIYPNYFFDSSVIEEAQNLKMSRGS 188


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 410 ECSLDLVSKSTWCE 369
           E S+DLV  ST+CE
Sbjct: 260 ERSVDLVVTSTYCE 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,774
Number of Sequences: 438
Number of extensions: 5332
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)