Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G23
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 169 QRQQLHGRRAMPQTKATGAAEPHTALHHHQS 261
           +R     +R         +  PH  LHHHQS
Sbjct: 789 RRLMSEDKRLSKSVNGDQSQPPHQQLHHHQS 819



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 560  QSPQYTGGRPQPYNPNSTPS 619
            + P  +GGRP P  P   P+
Sbjct: 1355 RGPSASGGRPVPERPERVPT 1374



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 196 AMPQTKATGAAEPHTALHHHQSGISHH 276
           A   T ATG  +  T   HH     HH
Sbjct: 123 ATATTTATGLIKQETLQRHHHLQNHHH 149


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 284 VIHTISTPHGQVQRIVVFKKN 346
           +IH I TPHG ++R V+ K++
Sbjct: 173 LIHWIWTPHGWMRRNVLNKQH 193


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +2

Query: 170 NGNNYMAGEPCRKRKLPARPNHILLYTIINPAYPITVDVIHT 295
           +G++++   P       A P+H     + + +YP  + + HT
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 226 AEPHTALHHHQSGISHHCGRNT 291
           ++PH   +  +S  +HHC ++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 281 DVIHTISTPHGQVQRIVVFKKNGVQAM 361
           + IHT S  + + +RI + +KNG+  +
Sbjct: 319 EAIHTGSVINTRGERIQLTEKNGIDVL 345


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 740 HHPPEVEAHHFHSPXH 693
           HHP +   H   SP H
Sbjct: 321 HHPSQYHPHRGSSPHH 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,688
Number of Sequences: 438
Number of extensions: 5495
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)