Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G19
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.9  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    26   5.0  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   8.8  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 225 GGIPTPFEDWSLVFTTSNGH 166
           GGIP  F+DW + +T    H
Sbjct: 441 GGIPISFKDWMISYTNRQKH 460


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 54  VAICSHVIILGFLKCLKRIQRCILWRAG 137
           + +   V  +GFL  +K+I  C+ W  G
Sbjct: 86  IELAKPVFHIGFLSKIKKILECVCWNCG 113


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 170 PLEVVKTRLQSSKGVGIPPTQP 235
           PL+VVKTRLQS        TQP
Sbjct: 44  PLDVVKTRLQSESISQYSSTQP 65


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 5   GCSCTFSGVALCLFIDSRNLQS 70
           GCS  +S  A+C F+++ NL S
Sbjct: 284 GCSYFYSYQAVCTFLENNNLLS 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,732
Number of Sequences: 5004
Number of extensions: 26623
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)