Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G19
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749...    30   2.3  
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    28   7.0  
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042     28   9.2  
02_02_0712 + 13200174-13200761,13201966-13202616                       28   9.2  

>07_01_0893 +
           7484598-7484744,7484837-7484902,7494387-7494530,
           7494860-7495235,7495904-7496017,7496282-7496454,
           7496562-7496669,7497311-7497377,7497791-7497904,
           7498121-7498257,7498727-7498813,7498962-7498986,
           7499044-7499266,7499770-7499947,7500039-7500152,
           7500249-7500380,7500488-7500588,7500720-7500933
          Length = 839

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 176 EVVKTRLQSSKGVGIPPTQPPPSDNTANNRKICSKIPKHQEAK 304
           ++ + R Q    V      PP   N  NN  +CS++PK  + K
Sbjct: 179 KIKEGRKQGGSNVAHNGNAPPLEQNHPNNTDVCSQLPKTPQTK 221


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 197 QSSKGVGIPPTQPPPSDNTANNRKICSKIPKHQEAK 304
           Q    V      PP   N  NN  +CS++PK  + K
Sbjct: 418 QGGNNVAHNGNAPPLEQNHPNNTDVCSQLPKTPQTK 453


>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
          Length = 819

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 221 PPTQPPPSDNTA-NNRKICSKIPKHQEAKWGYRRTMGAMFAYSKQA 355
           PP  P PS NTA  + +    IP+ Q A   Y   +G  FA   +A
Sbjct: 17  PPPPPAPSGNTAVEDSEAGPCIPRLQAATGDYTPWLGQEFASEHEA 62


>02_02_0712 + 13200174-13200761,13201966-13202616
          Length = 412

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 264 EKYVPRYLNIRRPNGATD--VQWVRCSH 341
           E Y+P +L IR P+  T+  V WV  SH
Sbjct: 320 EHYLPTFLGIRHPSRVTNRSVTWVDWSH 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,666,931
Number of Sequences: 37544
Number of extensions: 200088
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)