Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G18
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.3  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   5.4  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   9.5  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    25   9.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   9.5  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 222 PRVATPKSRITSWLGMTDSPPARAVLSFTIGG 317
           P+ A PK ++ S  G T +P +   +S ++GG
Sbjct: 109 PKPAIPKGKVLSLGGNTSAPKSTKPISISLGG 140


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 83  NARLKPHSLKLAFYNANGLARQRDQVYEFL 172
           N +L P  LK +FYNA     QR+QV++ +
Sbjct: 194 NKKLLPDYLK-SFYNAGSSYFQREQVHQLM 222


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/90 (22%), Positives = 34/90 (37%)
 Frame = +3

Query: 234 TPKSRITSWLGMTDSPPARAVLSFTIGGPCTASLSILPRSYISRRQCAAXXXXXXXXXXX 413
           TP +   S     D+  A A +S  +    ++  +++P S IS     +           
Sbjct: 185 TPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSY 244

Query: 414 HPYISLLTNPS*AVTSRHCSVWGTRSFWQA 503
               +  T+ S    S   S WG  SF++A
Sbjct: 245 ASSTTSATSTSTTSGSSGSSDWGRSSFYEA 274


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 323 HCVPLDTPSLLHIEA--SVCRIALTGHQP 403
           HC P D P  LH+ A  SV ++ + G +P
Sbjct: 8   HCHPTDAPQELHLVANLSVGKLIVMGTRP 36


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 120 STMLTDSRVSATRFMSF 170
           ST LTDSR  A RF+S+
Sbjct: 443 STYLTDSRRKANRFLSY 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,250
Number of Sequences: 5004
Number of extensions: 49430
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)