Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_G12
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 213 3e-56
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 115 1e-26
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 71 2e-13
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 1e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 54 2e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 54 3e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 53 4e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 53 4e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 53 6e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 53 6e-08
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 52 1e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 51 2e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 1e-06
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 44 3e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 5e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 43 5e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 43 6e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 6e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 8e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.003
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.004
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.007
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.009
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.022
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 34 0.028
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.050
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 33 0.066
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 33 0.066
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.066
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.066
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.087
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.087
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.15
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.20
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.81
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.81
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.4
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.3
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.3
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.3
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 26 5.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 7.5
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 7.5
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 213 bits (520), Expect = 3e-56
Identities = 93/165 (56%), Positives = 133/165 (80%), Gaps = 1/165 (0%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
T+S+L+EL +Q+GPVVN+H+P+DRV +H G+GF EF+ E+D +YA +++N +KL+GKP+
Sbjct: 23 TDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPI 82
Query: 344 RVNKASAHQ-KNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKA 520
RVN+AS + N +GAN+F+GNLDP VDE++LYDTFSA G +++ P+V RD E G SK
Sbjct: 83 RVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKG 141
Query: 521 FAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXKDVKGXXHG 655
+ F+++ SFE +DAAIEAMNNQ+L N+PI+VSYAF ++ KG HG
Sbjct: 142 YGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHG 186
Score = 30.3 bits (65), Expect = 0.35
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 112 ERNQDATIYVGGLDDR 159
+RNQDATIY+G LD++
Sbjct: 6 DRNQDATIYLGNLDEK 21
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 115 bits (276), Expect = 1e-26
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
TE++L+ELF GPV ++ + +D VT+ GY +V F ED + A+ +N + G+P
Sbjct: 92 TEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPC 151
Query: 344 RVNKASAHQKNLDVG-ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKA 520
R+ + +G NVFI NLDP +D K L+DTFSAFG IL KV D E GN+K
Sbjct: 152 RIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC-KVAVD-ELGNAKG 209
Query: 521 FAFINFASFEASDAAIEAMNNQYLCNRPISVSY 619
+ F++F S E+++AAIE +N L ++ + V +
Sbjct: 210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 81.0 bits (191), Expect = 2e-16
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 17/179 (9%)
Frame = +2
Query: 155 TGXTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYG 334
T TE +LF Q G + ++ + KD+ +G+GFV + E A A+ +N + G
Sbjct: 270 TEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKG 328
Query: 335 KPVRVNKASA-HQKNLDV----------------GANVFIGNLDPEVDEKLLYDTFSAFG 463
K + V +A H++ ++ G N+FI NL EVD++ L FSAFG
Sbjct: 329 KKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFG 388
Query: 464 VILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXKDVK 640
I + K+M D E G SK F F+ + + E ++ A+ MN + L +P+ V+ A K+V+
Sbjct: 389 TI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445
Score = 62.1 bits (144), Expect = 9e-11
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Frame = +2
Query: 176 LWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV-N 352
L + F G +++ + D + +GYGFV F E A+ AI+ +N + L K V V +
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNA-KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Query: 353 KASAHQKNLDVGA------NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 514
S ++ V A NV+I NLD E+ E+ D F FG I +++D +
Sbjct: 243 HVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL-SLVKD-QNDKP 300
Query: 515 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXK 631
+ F F+N+A+ E + A++ +N++ + + V A K
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
Score = 55.6 bits (128), Expect = 8e-09
Identities = 24/95 (25%), Positives = 49/95 (51%)
Frame = +2
Query: 338 PVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK 517
P + + A++++G LDP V E +L++ F++ G + +V RD T S
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASI-RVCRDAVTRRSL 121
Query: 518 AFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 622
+A++NF + E + A++ +N + RP + ++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 71.3 bits (167), Expect = 2e-13
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNM-IKLYGKP 340
TE+ + +++ G V V + ++R T + GY FVEF +A A+ + N I
Sbjct: 105 TEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHL 164
Query: 341 VRVNKASA---HQKNLDVGA--NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPET 505
++N AS +K++ + ++F+G+L P V+E +Y F++ ++ K+M DP+T
Sbjct: 165 FKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQT 224
Query: 506 GNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXK 631
S+ + F+ F +A+ M Q +RPI V A K
Sbjct: 225 NVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 230 DRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK 373
D T +GYGFV F E D A+ M +P+RV A+ K
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +2
Query: 389 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 568
A V +GNL P V E LLY+ F FG I+ + E +++AF+ F E + A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV--ALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
Query: 569 EAMNNQYLCNRPISVSYA 622
E MN LC+R I VS A
Sbjct: 64 ENMNYSILCDRCIRVSPA 81
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
TESLL+ F+ G +++V + + + + Y FVEF EDA A++ MN L + +
Sbjct: 18 TESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCI 76
Query: 344 RVNKAS 361
RV+ A+
Sbjct: 77 RVSPAN 82
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +2
Query: 374 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 553
++ G VF+GN+ +V E+ + + F+ G + +T K++ DPETG+ K + F F E
Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPV-KTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 554 SDAAIEAMNNQYLCNRPISVSY 619
+ A+ +NN L R I V +
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEF 82
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
+E + E+F Q GPV + D T + +GYGF EF E A++ +N +L + +
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKI 78
Query: 344 RV 349
RV
Sbjct: 79 RV 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 53.6 bits (123), Expect = 3e-08
Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Frame = +2
Query: 176 LWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN- 352
L +LF Q+G V+ + ++ ++ +G G V ++A +AI++++ G+ + V
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRS-RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 257
Query: 353 KASAHQKNLDVGAN----------VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPE 502
AH K D+ + +++GNL ++ L D F+ G +++ ++ +P
Sbjct: 258 DRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRA-RIAYEP- 315
Query: 503 TGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 622
TG SK F + F + + ++IE +N RP+ +SYA
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 53.2 bits (122), Expect = 4e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 356 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 535
+S HQ D A ++IGNLD +++E + FS FG + ++RD ETG SK FAF+
Sbjct: 21 SSWHQDYSD-SAYIYIGNLDFDLNEDDILCVFSEFGEPVDI-NLVRDKETGKSKGFAFLK 78
Query: 536 FASFEASDAAIEAMNNQYLCNRPISVSY 619
+ ++ A++ M N L +R + V +
Sbjct: 79 YEDQRSTVLAVDNMTNVKLLDRLVRVDH 106
Score = 34.3 bits (75), Expect = 0.022
Identities = 14/62 (22%), Positives = 36/62 (58%)
Frame = +2
Query: 185 LFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA 364
+F + G V++++ +D+ T +G+ F+++ + A+ M +KL + VRV+ ++
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVAS 109
Query: 365 HQ 370
++
Sbjct: 110 YK 111
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/88 (29%), Positives = 51/88 (57%)
Frame = +2
Query: 359 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 538
SA + + ++G ++F+ + + E L FS FG + ++MR+P T S+ F F++F
Sbjct: 91 SAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHV-RIMREPVTKASRGFGFLSF 149
Query: 539 ASFEASDAAIEAMNNQYLCNRPISVSYA 622
++ E + +AI+ +N+Q R ++V A
Sbjct: 150 STVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 45.6 bits (103), Expect = 9e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = +2
Query: 167 ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVR 346
E L ++F + G V +V + ++ VT+ +G+GF+ F E+A AI +N + YG+ +
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLN 173
Query: 347 VNKA 358
V KA
Sbjct: 174 VQKA 177
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 52.8 bits (121), Expect = 6e-08
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Frame = +2
Query: 176 LWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNK 355
L + F + G +V + D + +GYG+V+F E A A+ ++ G+ V ++
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDL 338
Query: 356 AS---------AHQKNLDVG-------ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKV 487
++ A Q+ + G VF+GNL E L F G I Q+ ++
Sbjct: 339 SNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDI-QSIRL 397
Query: 488 MRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXKDVKGXXHG 655
DP++G K F ++ F+ +++ +E MN ++ RP + ++ + G G
Sbjct: 398 PTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGG 452
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/93 (26%), Positives = 49/93 (52%)
Frame = +2
Query: 335 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 514
+P ++ K S VF+G L VD++ L F +G I+ +V+ D ++G S
Sbjct: 248 RPAKITKPSQDSNET---CTVFVGRLSWNVDDQWLGQEFEEYGTIVGA-RVIMDGQSGRS 303
Query: 515 KAFAFINFASFEASDAAIEAMNNQYLCNRPISV 613
K + +++F + EA+ AA+ A + + R +++
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
Score = 29.1 bits (62), Expect = 0.81
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
TE L F G + ++ +P D + +G+G+V F + A ++ MN + G+P
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPC 436
Query: 344 RVN 352
R++
Sbjct: 437 RLD 439
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 6e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
+F+GNL +V+++ LY FS + +++T KV+RD E G ++ F F++F + A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKT-KVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 575 MNNQYLCNRPISVSYAFXKDVK 640
N +Y+ +RP+ +S A DVK
Sbjct: 90 KNGKYIGSRPVKLSRA-TSDVK 110
Score = 30.7 bits (66), Expect = 0.26
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +2
Query: 92 WQRGLLLKEIKMQPFTLAVSMTGX--TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGF 265
W+ LL E F L V G + L++ F + +V + +DR +T +G+GF
Sbjct: 17 WEDPTLL-EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKT-RGFGF 74
Query: 266 VEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDV 385
V F + A + N + +PV++++A++ K +V
Sbjct: 75 VSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEV 114
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 51.6 bits (118), Expect = 1e-07
Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
T+ L + F Q G V++ + +D T +G+GF+ F + + + + L GK +
Sbjct: 175 TDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKII 232
Query: 344 RVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAF 523
+A ++ + A +F+G + + E+ + F+ FG +L +M D +TG + F
Sbjct: 233 DPKRAIPREEQ-EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT-LMMDKDTGRPRGF 290
Query: 524 AFINFASFEASDAAIEA-MNNQYLC--NRPISVSYAFXK 631
F+ + +++A+EA M+ Y+ +P+ V A K
Sbjct: 291 GFVTY----ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 538
+FIG L+ E + L D F FG +L VMRD TG S+ F F+ F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCT-VMRDSTTGRSRGFGFLTF 211
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 50.8 bits (116), Expect = 2e-07
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Frame = +2
Query: 176 LWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNK 355
L F GP+ + + + T ++GYGFV F EDA A K + KL+G+ +R++
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 356 ASAHQKN-LDVGAN--------------VFIGNLDPEVDE-KLLYDTFSAFGVILQTPKV 487
A+ +++ +D N + I NL + + + L FS FG + +
Sbjct: 81 ATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKV----RE 136
Query: 488 MRDPETGNSK--AFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXKD 634
++ P G + FAF+ +A++ A+ ++N + RPI+V +A KD
Sbjct: 137 IKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
Score = 38.3 bits (85), Expect = 0.001
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
VF+ NL E E+ LY+ F FG L K+++DP T S FI F + +E
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGP-LAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE- 336
Query: 575 MNNQYLCNRPISVSYAFXKDV---KGXXHGSXXXKFLLH 682
M +Q P F V +G S +FLLH
Sbjct: 337 MASQLPTQEPTEAEKRFLPSVLVDEGIDTDSVSSRFLLH 375
Score = 34.3 bits (75), Expect = 0.022
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMI 322
TE L+ F Q GP+ + KD T G GF++F E+D +++ + +
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQL 341
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 48.4 bits (110), Expect = 1e-06
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +2
Query: 254 GYGFVEFMGEEDADYAIKVMNMIKLYGKPVR--VNKASAHQKNLDVGANV-FIGNLDPEV 424
G+G + E+ + + I G+ + K + KNL V ++G L
Sbjct: 57 GFGSSDDDEEDSPNALVNTSRQIMDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGF 116
Query: 425 DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYL 592
EK + FS FG +L+ ++ R+ +TG+SK +AFI F S + ++ E M+N L
Sbjct: 117 YEKQMRMYFSQFGPVLRL-RMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLL 171
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 158 GXTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGK 337
G E + F Q GPV+ + M ++R T + + Y F+EF + A+ + M+ LYGK
Sbjct: 115 GFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGK 174
Query: 338 PVRVNKASAHQ--KNLDVGANV 397
++ Q +N+ GA+V
Sbjct: 175 LLQCKVIPEDQVHENMFKGADV 196
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 44.0 bits (99), Expect = 3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
+F+ L+P ++ L FS FG I+ +V+RD ETG+S +AFI F + E+ + A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISC-QVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 575 MNNQYLCNRPISVSYA 622
M N + + I V ++
Sbjct: 305 MQNVLIDDSRIHVDFS 320
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 185 LFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYA-IKVMNMI 322
+F + G +++ + +D+ T Y F+EF +E + A K+ N++
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVL 309
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 3e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +2
Query: 263 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 442
++ F A A+ +N + +RV+ S H D VF+GNL E +E+ L+
Sbjct: 230 YIVFRDSSSARSALS-LNGTMFMDRHLRVDSVS-HPMPQDTKRCVFVGNLAFEAEEEPLW 287
Query: 443 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 568
F G I +++RDP+T K FA+I F D A+
Sbjct: 288 RYFGDCGSI-DYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 5e-05
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Frame = +2
Query: 95 QRGLLLKEIKMQPFTLAVSMTGX--TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFV 268
+R L E + T+ VS T L++ F Q+GPV + + +D+++ +G +V
Sbjct: 227 ERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
Query: 269 EFMGEEDADYAIKVMNMIKLYGKP--VRVNKASAHQKNLDVGA------------NVFIG 406
EF E+ AI + +L G P V++ +A ++K + + +
Sbjct: 287 EFCHEDSVQAAIALSGK-RLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVS 345
Query: 407 NLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQ 586
N+ + ++ + F FG I + + RD + SK F +I + + ++ A+E MN
Sbjct: 346 NIHFNLTDEDVKAIFEPFGDI-EFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGF 403
Query: 587 YLCNRPISV 613
L R + V
Sbjct: 404 DLAGRNMRV 412
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.2 bits (97), Expect = 5e-05
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Frame = +2
Query: 224 PKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN------KASAHQKNLD- 382
PK G+GFVEF + A A+ MN L G + + A+A + D
Sbjct: 656 PKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDS 715
Query: 383 ---VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 553
G + I NL E +K + A+G L++ +V + + +++ FAF F +
Sbjct: 716 SKPKGTKILIKNLPFEATKKDVQSLLGAYGQ-LRSVRVPKKFDR-SARGFAFAEFVTARE 773
Query: 554 SDAAIEAMNNQYLCNRPISVSYA 622
+ A+ A+ N +L R + + YA
Sbjct: 774 AANAMRALKNTHLLGRHLVLQYA 796
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 167 ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVR 346
E L LF G + VHMP D+ T +G+ +++F +DA A ++ G+ +
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLH 395
Query: 347 VNKASAHQKNL 379
V A A L
Sbjct: 396 VLPAKARSSIL 406
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 42.7 bits (96), Expect = 6e-05
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Frame = +2
Query: 206 VVNVHMPKDRVTQ-THQGYGFVEFMGEEDADYAI----KVMN----MIK----LYGKPVR 346
+ +HMP + + ++G+ +V+F E+ A+ K +N +IK G+P +
Sbjct: 149 ITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSK 208
Query: 347 ----VNK-ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGN 511
++K AS + + +F+GNLD E + L + F G I + ++M +TG
Sbjct: 209 PANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRV-RLMTFEDTGK 267
Query: 512 SKAFAFINFASFEASDAAIEAMNNQY 589
K F F++F + A+E +N +
Sbjct: 268 CKGFGFVDFPDIDTCMKAMELGHNSW 293
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNM 319
T++ L E F Q G + V + T +G+GFV+F D D +K M +
Sbjct: 240 TDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTCMKAMEL 288
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/90 (25%), Positives = 45/90 (50%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
TE ++ LF + G + + M DR T+T G+ FVE+ +DA ++K ++ L + +
Sbjct: 44 TEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDERII 103
Query: 344 RVNKASAHQKNLDVGANVFIGNLDPEVDEK 433
R + +++ G G + E+ E+
Sbjct: 104 RADLDHGYEEGRQYGRGASGGQVRDEMREE 133
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 6e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +2
Query: 359 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 538
S ++ D A + + NL + E+ L D F FG I Q + +D ETG +K FAF+
Sbjct: 192 SMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGI-QRVYLAKDKETGRAKGFAFV-- 248
Query: 539 ASFEASDAAIEA 574
S+ D AI+A
Sbjct: 249 -SYYDRDCAIKA 259
Score = 33.1 bits (72), Expect = 0.050
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 167 ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYG 334
E L +LF + G + V++ KD+ T +G+ FV + D D AIK + + YG
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYY---DRDCAIKARDRLDGYG 267
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNM 319
TE + +LF GPV N+H+ DR T +GY +E+ E A A+ N+
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
V++GN+ E+ E+ + D F G + V+ DPE+G K + F + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVI-DPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 575 MNNQYLCNRPISVSY 619
+NN R + V +
Sbjct: 66 LNNYDAGTRRLRVDF 80
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 167 ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVR 346
E + ++F QSGPV + + D + +GYGF E+ A A++ +N + +R
Sbjct: 18 EEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLR 77
Query: 347 VNKASAHQ-KNLD 382
V+ +A Q + LD
Sbjct: 78 VDFPTADQIRRLD 90
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +2
Query: 392 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 571
+V++GN+D V + L F++ G + + ++ D TG+ K FA+I F+ A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVT-ILCDKFTGHPKGFAYIEFSEPSLVPNAL- 113
Query: 572 AMNNQYLCNRPISVS 616
+N L RP+ V+
Sbjct: 114 LLNGSMLHERPLKVT 128
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
+ + L PE+ E+ + A G + T ++R+ ET S+ FAF F S + S +EA
Sbjct: 73 IILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEA 132
Query: 575 MNNQYLCNRPISVSYAFXKDVKGXXHG 655
N L I VS F + + G
Sbjct: 133 -NFPTLVIDGIDVSVRFSRAAREQIEG 158
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 167 ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVR 346
ES + F + GP+ + + +++VT GY FV F E D A K + L G+ +
Sbjct: 113 ESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIV 172
Query: 347 VN 352
V+
Sbjct: 173 VD 174
Score = 31.5 bits (68), Expect = 0.15
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
+F+ L + E + F+ +G I + +V+R+ TG S +AF+ F A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPI-ERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 575 MNNQYLCNRPISVSYAFXKDVKG 643
L R I V + VKG
Sbjct: 161 SAGLMLNGRRIVVDVERGRTVKG 183
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.5 bits (78), Expect = 0.009
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +2
Query: 392 NVFIGNLDPEV--DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFA-SFEASDA 562
N+F+ NLD + + + L + FS FG I ++ + P T SK + F++F+ FEA
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRI-KSCTLASYPSTEISKGYGFVSFSHPFEAVQ- 477
Query: 563 AIEAMNNQYLCNRPISVSYA 622
AI +N + + V+YA
Sbjct: 478 AINTLNGVLFGKKRLFVNYA 497
Score = 33.5 bits (73), Expect = 0.038
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = +2
Query: 149 SMTGXTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKL 328
++ G T+ L ELF + G + + + T+ +GYGFV F +A AI +N +
Sbjct: 429 NIVGNTQQLE-ELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLF 487
Query: 329 YGKPVRVNKASAHQKNLDVGANVFIGNLDPEV 424
K + VN A + + +F + P V
Sbjct: 488 GKKRLFVNYAEKREDRKKRLSAIFSQSYPPVV 519
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 34.3 bits (75), Expect = 0.022
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 230 DRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 361
D VT + YGFV F E++ +A+ M G+P+R++ AS
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS 260
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.028
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 182 ELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 361
+ F Q GP+++V + KD + + Y FV+F +DA A+ L G+ +R+ +A
Sbjct: 101 DYFQQWGPLLHVKVLKDWLQRP---YSFVQFQNTDDASKALSEAQNTILDGRHIRIERAK 157
Query: 362 AHQ 370
++
Sbjct: 158 VNR 160
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 33.1 bits (72), Expect = 0.050
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 574
+++GNL V + TFSA+G + + + K AF+NF S E + +E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRML-------SHKHSAFLNFDSVETAKHVLEE 641
Query: 575 MNNQ--YLCNRPISVSYA 622
+N + + + P+ +S+A
Sbjct: 642 LNGKRIFFGSDPVCISFA 659
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.7 bits (71), Expect = 0.066
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +2
Query: 266 VEFMGEEDADYAIKVMNMIKLY-GKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 442
+EF ++ A A++ + +L G P+ ++ QK +FI N+DPEV E +
Sbjct: 33 IEFESQDAARNALERQSTQRLISGNPISLDVVPEWQKPSYY--MLFISNIDPEVSENDIK 90
Query: 443 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 613
F + I + +V+R + G S + AFI A+ A M + R I V
Sbjct: 91 YLFQRYNFI--SARVLRCVD-GTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILV 144
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 32.7 bits (71), Expect = 0.066
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 173 LLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV 349
+L LF G V++V K T +G FV F E+A A+K + LYGKP+ +
Sbjct: 45 ILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMI 100
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.066
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Frame = +2
Query: 356 ASAHQKNLDVGA----NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS--- 514
ASA Q N VF+G L + + F G + + R G
Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88
Query: 515 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 622
AF+ F + E D AIE +N + L +R I V A
Sbjct: 89 SGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 500 ETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXKDVK 640
E + F F++FA+ E AIE MN + + + + V A ++ K
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK 299
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.066
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +2
Query: 377 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFE 550
+++ +++G L ++ L FS FG + + + G + FA++NF + E
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.087
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +2
Query: 164 TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPV 343
T+ + E+F G + ++ MP + ++ ++GY ++E++ + A A+ MN +L G+ +
Sbjct: 111 TKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEEL 170
Query: 344 RVN 352
V+
Sbjct: 171 FVS 173
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 32.3 bits (70), Expect = 0.087
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 131 PFTLAVSMTGX--TESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 304
PFT V TE+ L + F + V ++ + D +T+ +G+G+VEF + A+
Sbjct: 93 PFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL 150
Query: 305 KVMNMIKLYGKPVRVNKA 358
++ L G+PVR+ A
Sbjct: 151 -ALSGEDLMGRPVRITVA 167
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 188 FVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN 352
F ++G V +V +P D+ + +GY FVEF+ + D K + K ++N
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK-TDVISKALKFHHTIYKERKIN 165
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.1 bits (67), Expect = 0.20
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 3/140 (2%)
Frame = +2
Query: 230 DRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDV-GANVFIG 406
D T +GYGF F E+ A I M + + + ++ Q D N++I
Sbjct: 330 DMETNLCKGYGFACFEEEKSALICISAMTLCGYQCSFAKESFSARLQSLQDTESTNLYIS 389
Query: 407 NLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQ 586
NL +E + F +I + +V+RD + S+ F + ++ I NN
Sbjct: 390 NLPLHWNESDISTLFKPSKII--SNRVLRDSKE-QSRGVGFARMQDRKTAEDIINKFNNF 446
Query: 587 YL--CNRPISVSYAFXKDVK 640
L P+ + +A D K
Sbjct: 447 VLDPALPPLQIRFADSTDQK 466
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.81
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Frame = +2
Query: 26 QCQTEENKRFA-VVYELSNFLKKWQRGLLLKEIKMQPFTLAVSMTGXTESLLWELFVQSG 202
Q E+ +RF + + + + W G ++ F ++ ++ LW++F G
Sbjct: 331 QMNLEDEQRFQQFLKDEESIMSNWYPGQFPSASRL--FLGHLNTKSLSKRNLWKVFKIYG 388
Query: 203 PVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM--NMI---KLYGKPVRVNKASAH 367
P+ + + + YGFV+F ED A+ N + KL+ + ++ K +
Sbjct: 389 PLAQIVLKAN--------YGFVQFFTNEDCARALNAEQGNFVRGQKLHLEISKIQKKYQN 440
Query: 368 Q-KNLDVGANVFIGNLDPEVDEKLLYDTFS 454
Q +N+ G++V N E+ L Y T S
Sbjct: 441 QIENMKKGSHVTKSNQYSEMIGNLPYPTSS 470
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.81
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 374 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 469
N NVFIGNL EK + + F FG I
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF-------ASFEA 553
VF+ N+ P V + L F +FG + + +P TG S I+F + +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDL-DLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 554 SDAAIEAMNNQYLCNRPISV 613
+ A++ N +P+SV
Sbjct: 155 AKIAVQQANGLRFSGKPLSV 174
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 392 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 571
N++IGN D + + L + F FG I + R+ K AF+NF S ++ AI+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI-EYVNFFRE------KNCAFVNFTSLASAINAID 467
Query: 572 AMNNQ 586
+ +
Sbjct: 468 RIKQK 472
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 392 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 571
NVF+GNL + E + + FG I Q K++ + + AF++F + A+ A++
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQI-KIVTE------RNIAFVHFLNIAAAIKAVQ 259
Query: 572 AM 577
+
Sbjct: 260 EL 261
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 395 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK-AFAFINFASFEASDAAIE 571
+FIGN+ E+D+ + G + +V + NS +F F F S E A+E
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVA---DADNSMTSFGFAEFESNEQFSRALE 197
Query: 572 AMNN 583
A+N+
Sbjct: 198 ALND 201
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 167 ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVR 346
E + EL G +++ + K+ + +G+ F EF DA+ AI ++ YG +
Sbjct: 323 EDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLH 382
Query: 347 VNKA 358
A
Sbjct: 383 AQFA 386
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 188 FVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 304
F G V +V +PK R Q H+G+G+V +DA+ A+
Sbjct: 777 FRDYGQVESVRIPK-RFNQ-HKGFGYVVMTTNQDAENAL 813
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 4.3
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = -3
Query: 642 PFTSXLNAYETDIGLLHRYWLFIASIAASEASNDAKLIKAKAFEFPVSGSLITLGVCNIT 463
PFT L + D LL I ++ E N+ K+ F P+S L+ + I
Sbjct: 357 PFT--LKRLQKDFQLLKAK--LICALREWEEDNEKKIY---VFGKPLSSRLLMIHSPPIL 409
Query: 462 PNAENVSYNNFSSTSGSKFP 403
N EN+S N+ S +S P
Sbjct: 410 QNQENISSNDNSKSSPESSP 429
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/48 (20%), Positives = 22/48 (45%)
Frame = +2
Query: 179 WELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMI 322
W + + V+ + + +R+ Q +GF E +D K+M ++
Sbjct: 240 WAQILGASKVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELV 287
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 116 LSAIGPAAIFSKNLTTHKLPRSVCFLRSDI 27
+S +GP F L+THK R C S +
Sbjct: 522 MSILGPCLSFLMKLSTHKNERIACLSASQL 551
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 368 QKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASF 547
Q N + +VF+ N+ PE + L S FG + + E K A+++F +
Sbjct: 308 QSNELLETSVFVKNIPPETSDVSLKSAMSIFGPV-------KAIEFARRKGTAYVDFVNH 360
Query: 548 EASDAAI 568
E A+
Sbjct: 361 ECVQLAL 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,190
Number of Sequences: 5004
Number of extensions: 59074
Number of successful extensions: 248
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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