Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G11
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   1.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   5.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.1  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 201 LEAAGSESRPSPSVEGPTSQSERGSST 121
           L   G  SRP+P V+  TS ++ GSST
Sbjct: 217 LRKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 267  YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 362
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 464 RYATCNRQRAPPPSRSQ 414
           RY++  R R+PPPSR +
Sbjct: 91  RYSSVGRSRSPPPSRER 107


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 183 ESRPSPSVEGPTSQSERGSS 124
           ES PSPS   P+S S R  S
Sbjct: 59  ESAPSPSTSSPSSASSRSQS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,503
Number of Sequences: 5004
Number of extensions: 41722
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)