Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G11
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 424 PGPRVAPPASKHAASKETVRYPRI-ALTAIARCGR 323
           P PR  PP+ K +  +   R PR  +++ I R  R
Sbjct: 394 PPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASR 428


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 443 QRAPPPSRSQGGAPG 399
           QR  PP+ SQG  PG
Sbjct: 35  QRGSPPNPSQGPPPG 49


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 294 GRGTIREPRIVPS 256
           GRG  RE RI+PS
Sbjct: 320 GRGRSREHRIIPS 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 7   FSRAGTSAACGCPPR 51
           F+  GT+A   CPP+
Sbjct: 555 FNEFGTTAVVNCPPQ 569


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 7   FSRAGTSAACGCPPR 51
           F+  GT+A   CPP+
Sbjct: 555 FNEFGTTAVVNCPPQ 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,775
Number of Sequences: 438
Number of extensions: 4354
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)