Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G09
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    48   8e-06
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    48   8e-06
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    48   8e-06
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   9.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   9.4  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    28   9.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   9.4  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 9   KDYLGNYRPICHISNVYKVFAKVIFARISMRHDENQPVEQAG 134
           ++ L NYRPIC +  +YKVF K +  R+    DE QPVEQAG
Sbjct: 446 RENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAG 487


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 9   KDYLGNYRPICHISNVYKVFAKVIFARISMRHDENQPVEQAG 134
           ++ L NYRPIC +  +YKVF K +  R+    DE QPVEQAG
Sbjct: 617 RENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAG 658


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 9   KDYLGNYRPICHISNVYKVFAKVIFARISMRHDENQPVEQAG 134
           ++ L NYRPIC +  +YKVF K +  R+    DE QPVEQAG
Sbjct: 356 RENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAG 397


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 660 GGXXPPXXXPPXXXGPPP 713
           GG  PP   PP   GPPP
Sbjct: 711 GGPPPPPGLPPITGGPPP 728


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 660 GGXXPPXXXPPXXXGPPP 713
           GG  PP   PP   GPPP
Sbjct: 711 GGPPPPPGLPPITGGPPP 728


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 294 RHPRSRPTQSARTGRTASTVRM--PADGSAKRRDHASSTDRRDWSLRA 157
           R  RSR  + +R  R+ S+ R   P   S +R +  S + +RD  LRA
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRA 151


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 660 GGXXPPXXXPPXXXGPPP 713
           GG  PP   PP   GPPP
Sbjct: 294 GGPPPPPGLPPITGGPPP 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,737
Number of Sequences: 27780
Number of extensions: 261293
Number of successful extensions: 841
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)