Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_G07
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.030
07_03_1136 + 24218601-24218734,24218769-24219906 35 0.070
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.1
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.0
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 30 2.0
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 2.0
03_01_0515 - 3864796-3865425 30 2.6
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 4.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.6
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 6.1
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.1
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 36.3 bits (80), Expect = 0.030
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +3
Query: 669 GPXXPPPRXRXXPPPXAPGGRXXPXXXXXXGRXGXXXPPXXGPXXRGGXXPGXP 830
GP PPP PPP G P + G PP G R PG P
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Frame = +3
Query: 681 PPPRXRXXPPPXAPGGRXXP----XXXXXXGRXGXXXPPXXGPXXRGGXXPGXPP 833
PPP + PPP P G P G PP P + G P PP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.1 bits (77), Expect = 0.070
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -3
Query: 832 GGXPGXXPPRXXGPXXGGXXXPXRPXXXXXXGXXRPPG--AXGGGXXRLLGGGXXG 671
GG G P R G GG P RPPG GGG R GGG G
Sbjct: 137 GGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGG 192
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = -3
Query: 832 GGXPGXXPPRXXGPXXGGXXXPXRPXXXXXXGXXRPPGAXGGGXXRLLGGGXXG 671
GG G P R G GG P G G GG R++GGG G
Sbjct: 175 GGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGGGG 228
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Frame = -3
Query: 832 GGXPGXXPPRXXGPXXGGXXX--PXRPXXXXXXGXXRPP----GAXGGGXXRLLGGGXXG 671
GG PG P GG P P G RPP G GG R+LGGG G
Sbjct: 95 GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/76 (27%), Positives = 21/76 (27%)
Frame = -2
Query: 833 GGXPGXXXPPXXGXRRGGXXXXGAXRXXXPXXXXAPPGGPXGGXXAXPRGGXXXTXGXXE 654
GG G P G GG PPGG GG P GG G
Sbjct: 125 GGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGR 184
Query: 653 XXXXPXXAGGXPPAXG 606
GG A G
Sbjct: 185 APGGGGGGGGPGRAPG 200
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.1
Identities = 31/114 (27%), Positives = 35/114 (30%), Gaps = 5/114 (4%)
Frame = +3
Query: 507 GSRMPNSDQXGXPGLTXXYPVXAXXGPXXGDRXPXRRGXXAGXRGPXXXLXXXXGPXXPP 686
G+ P G G+ P+ G P G G P + GP PP
Sbjct: 1107 GAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGI--GGVPPPPPVGGLGGPPAPP 1164
Query: 687 PRX--R-XXPPPXAPGG--RXXPXXXXXXGRXGXXXPPXXGPXXRGGXXPGXPP 833
P R PPP A GG P G G PP PG PP
Sbjct: 1165 PPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPP 1218
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 364 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 516
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 209 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 325
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Frame = +3
Query: 672 PXXPPPRXRXXPPPXAPGGRXXP-----XXXXXXGRXGXXXP------PXXGPXXRGGXX 818
P PPP R PPP G P G G P P GP GG
Sbjct: 194 PPTPPPTPRGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYPFPPPSLPGVGPPRGGGAI 253
Query: 819 PGXP 830
PG P
Sbjct: 254 PGLP 257
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = +3
Query: 669 GPXXPPPRXRXXPPPXAPGGRXXPXXXXXXGRXGXXXPPXXGPXXRGGXXPGXPP 833
GP PPP PPP AP P G PP P GG P PP
Sbjct: 263 GPPRPPPPQVPPPPPQAP---PPPPPNAPMG-----MPPRIPPPPVGGTQPPPPP 309
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 672 PXXPPPRXRXXPPPXAPGGRXXPXXXXXXGRXGXXXPPXXGPXXRGGXXPGXPP 833
P PPP PPP A G P PP P P PP
Sbjct: 50 PLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPP 103
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 311 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 147
H P AAA P VP++ P L + GG GL S S + G + D G+ G
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +3
Query: 669 GPXXPPPRXRXXPPPXAPGGRXXPXXXXXXGRXGXXXPPXXGPXXRGGXXPGXPP 833
GP PPP P G P GR G PP P GG PP
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPP---PALPGGPRARGPP 399
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +3
Query: 669 GPXXPPPRXRXXPPPXAPGGRXXPXXXXXXGRXGXXXPPXXGPXXRGG 812
GP PP+ P P PG + P G PP GP + G
Sbjct: 175 GPKPKPPKPGPKPKPPKPGPKPKP-KPPKPGPKPKPKPPKPGPKPKPG 221
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 338 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 171
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,565,829
Number of Sequences: 37544
Number of extensions: 550235
Number of successful extensions: 2032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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