Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G06
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    28   6.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   6.2  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   6.2  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    28   8.3  
02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108           28   8.3  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 606 PXKKPPPXGXXXPPPXXGGGXXGPQK 529
           P   PPP     PPP   G   GPQ+
Sbjct: 34  PTPPPPPPRRRTPPPPPPGSGPGPQR 59


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 606 PXKKPPPXGXXXPPPXXGGGXXG 538
           P   PPP G   PPP   GG  G
Sbjct: 353 PPPPPPPKGPSPPPPPPPGGKKG 375


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 536 GPXXPPPXXGGGXXXPXGGG 595
           GP  PPP  GGG     GGG
Sbjct: 392 GPGAPPPYHGGGGGGGGGGG 411


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 533 WGPXXPPPXXGGG 571
           WGP  PPP  GGG
Sbjct: 16  WGPPQPPPSTGGG 28


>02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108
          Length = 139

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 530 FWGPXXPPPXXGGGXXXPXGGGFXXG 607
           F+ P   PP  GGG     GGG+  G
Sbjct: 42  FFPPQWAPPVAGGGGPFAGGGGYGSG 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,725
Number of Sequences: 37544
Number of extensions: 162720
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)