Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G06
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    30   1.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   5.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   5.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   5.6  

>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 609 PPXKKPPPXGXXXPPPXXGGGXXGP 535
           PP   PP  G   PPP   GG  GP
Sbjct: 578 PPPPPPPMLGGPPPPPPPPGGLMGP 602


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 609 PPXKKPPPXGX--XXPPPXXGGGXXGP 535
           PP   PPP G     PPP  GG   GP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGP 784


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 609 PPXKKPPPXGX--XXPPPXXGGGXXGP 535
           PP   PPP G     PPP  GG   GP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGP 784


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 609 PPXKKPPPXGX--XXPPPXXGGGXXGP 535
           PP   PPP G     PPP  GG   GP
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGP 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,376,510
Number of Sequences: 27780
Number of extensions: 127506
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)