Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G04
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   2.6  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    27   3.5  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    27   3.5  

>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 273 VVWHPPSSTVEFRGERGFDQKGQPSLSR 190
           ++W P S TV   G RGF ++ + S+ R
Sbjct: 189 LLWLPCSPTVTLLGSRGFSKRSKTSVFR 216


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 29  YRSEVGARR*SWRAIEELSLRE 94
           Y++ +GARR SWR I  +  +E
Sbjct: 50  YKNIIGARRASWRIISSIEQKE 71


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 29  YRSEVGARR*SWRAIEELSLRE 94
           Y++ +GARR SWR +  +  +E
Sbjct: 51  YKNVIGARRASWRIVSSIEQKE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,030
Number of Sequences: 5004
Number of extensions: 42956
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)