Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G04
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426     29   3.6  
05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492     28   6.3  
05_01_0117 + 815590-815884,816347-816393                               28   6.3  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    28   8.4  

>11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426
          Length = 860

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 274 RTSPGWDSSPXGIFCFTQCAVRRELRLLDVHXSXXAKRDPRSGFEKR 414
           R SP W S    +  F +    RE RLL+V  +  AK D  SGF+ R
Sbjct: 782 RDSPNWTSDLDAMNAFDRF---RE-RLLEVEKNIVAKNDKGSGFKNR 824


>05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492
          Length = 283

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +3

Query: 129 GNFCRSSLPPLRKSDDNLAHSAKEKADLSGQNLFRLETRLWTTGGATPPNIPRVG*LPXR 308
           G F  S    LR + ++L H     A+L G N   L T +    GA     P +  LP  
Sbjct: 198 GEFEESEWRALRVNTNSLMHLRLTLANLLGHNRDALHTTVCVRAGAYAQLSPLLVDLPIG 257

Query: 309 NFLLHTVCSQAGAP 350
           N  +  V    G P
Sbjct: 258 NDRIDVVVLSHGTP 271


>05_01_0117 + 815590-815884,816347-816393
          Length = 113

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/74 (27%), Positives = 28/74 (37%)
 Frame = +3

Query: 129 GNFCRSSLPPLRKSDDNLAHSAKEKADLSGQNLFRLETRLWTTGGATPPNIPRVG*LPXR 308
           G +      P+R + +NL H     A+  GQN    +  L    G      P +  LP  
Sbjct: 25  GRYGEQEWAPVRVNTNNLTHLRLTMAERLGQNCDAGQITLCVRAGRYAHLSPLLVDLPMG 84

Query: 309 NFLLHTVCSQAGAP 350
           N  +H V    G P
Sbjct: 85  NNPIHIVVLNHGTP 98


>03_01_0300 +
           2350232-2352274,2352349-2352669,2352752-2352838,
           2353031-2353708,2353800-2353964,2354139-2354433,
           2354581-2354795,2354885-2355190,2355269-2355332,
           2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 360 VQESELPPDCTLCEAENSXRGAIPPGGCSVVWHPPSSTVEFRG 232
           +Q+ ELP D T+     S   AI     +  W+P S T    G
Sbjct: 601 LQQEELPDDATITVPHGSTDKAININDATFSWNPSSPTPTLSG 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,341
Number of Sequences: 37544
Number of extensions: 437462
Number of successful extensions: 1151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)