Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_G04
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
 Frame = -1

Query: 264 HPPSSTVEFRGERGFDQKGQPSL--------SRCGPDCHRTCAVV 154
           H     +   GE G ++   P L        SRC P+ H++C  V
Sbjct: 447 HTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSCICV 491


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
 Frame = -1

Query: 264 HPPSSTVEFRGERGFDQKGQPSL--------SRCGPDCHRTCAVV 154
           H     +   GE G ++   P L        SRC P+ H++C  V
Sbjct: 447 HTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSCICV 491


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 5   GFLIRELRYRSEVGARR 55
           GFL  EL Y  E+G R+
Sbjct: 449 GFLAGELTYSQEIGDRQ 465


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 162 RKSDDNLAHSAK 197
           RKS +NLAHS K
Sbjct: 27  RKSANNLAHSMK 38


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 218 SKPLSPRNSTVDDGGCHT 271
           S  ++P+    D+GG HT
Sbjct: 6   SSEINPKEGLYDEGGKHT 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,637
Number of Sequences: 438
Number of extensions: 3677
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)