Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_F22
         (1363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.37 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 835 PPPPPXXXXXXPPPXXPXGGXKKKIXXXXAPPPXXFFXKXXXPXXXPPPXGXXXXPPPP 659
           PPPPP        P  P G           PPP         P    PP G    PPPP
Sbjct: 312 PPPPPPSRRNRGKP--PIGNGSSNSSLPPPPPPPRSNAAGSIPL---PPQGRSAPPPPP 365


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 835 PPPPPXXXXXXPPPXXPXGGXKKK 764
           PPPP       PPP  P G  KK+
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 835 PPPPPXXXXXXPPPXXPXGGXKKK 764
           PPPPP       PP  P  G  KK
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/67 (28%), Positives = 19/67 (28%)
 Frame = -1

Query: 859 QKXXWXGGPPPPPXXXXXXPPPXXPXGGXKKKIXXXXAPPPXXFFXKXXXPXXXPPPXGX 680
           QK      PPPPP      P P                PPP         P   P   G 
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAP-----------IPVPPPAPIMGGPPPPPPPPGVAGA 773

Query: 679 XXXPPPP 659
              PPPP
Sbjct: 774 GPPPPPP 780



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -1

Query: 835 PPPPPXXXXXXPPPXXPXGGXKKKIXXXXAPPP 737
           P PPP      PPP  P  G          PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
 Frame = -2

Query: 864 PPKKXXGXXXXPPPP--XXXXXPPPPXXPXGGKKKKFXXFXPPPP 736
           PP    G    PPPP       PPPP  P          +  P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = -1

Query: 799  PPXXPXGGXKKKIXXXXAPPPXXFFXKXXXPXXXPPPXGXXXXPPPP 659
            PP  P      ++     PPP         P   P P G    PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP--MSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/59 (28%), Positives = 17/59 (28%)
 Frame = -1

Query: 838  GPPPPPXXXXXXPPPXXPXGGXKKKIXXXXAPPPXXFFXKXXXPXXXPPPXGXXXXPPP 662
            G PP P      PP   P G          APP          P    P  G    PPP
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,667
Number of Sequences: 5004
Number of extensions: 26067
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 751153284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)