Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_F14
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 196 2e-50
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 194 5e-50
01_05_0125 - 18382402-18382761,18382863-18383036 29 3.2
05_04_0324 - 20273797-20274261 29 4.2
03_02_0797 - 11296426-11297258,11297745-11297901 28 7.4
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 9.7
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 196 bits (478), Expect = 2e-50
Identities = 83/116 (71%), Positives = 103/116 (88%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 615 RFKKMIRYCSVVRVIXHTQM-XXXXXXXXXXHIMEIPPYRWYHRGQXEMGQKNLEKPIP 788
+ +KM +Y S+VRVI HTQ+ H+MEI + + G K EK IP
Sbjct: 149 QLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIP 207
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 194 bits (474), Expect = 5e-50
Identities = 82/116 (70%), Positives = 103/116 (88%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 615 RFKKMIRYCSVVRVIXHTQM-XXXXXXXXXXHIMEIPPYRWYHRGQXEMGQKNLEKPIP 788
+ +KM +Y SVVRVI HTQ+ H+MEI + + G K EK IP
Sbjct: 149 QLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIP 207
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 409 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 278
R+ S ++ +L PPR ST R+V E C+ + R + +E
Sbjct: 38 RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 127 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 300
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 301 VGYIETPHGLRAL 339
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>03_02_0797 - 11296426-11297258,11297745-11297901
Length = 329
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 603 INRKRFKKMIRYCSVVRVIXHTQMXXXXXXXXXXHIMEIPPYRWYHRGQXEMGQKNLEKP 782
+N ++FK ++RY + R++ Q + PP W H G + ++ E P
Sbjct: 131 VNSQQFKDVMRYLWMPRLVERIQAAAAGQQQQQEGGTDTPPLSWQHGGSDGL-YESPELP 189
Query: 783 IP 788
P
Sbjct: 190 AP 191
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/63 (20%), Positives = 34/63 (53%)
Frame = -3
Query: 457 MHKVTYSRHINKALIFREESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 278
+ +++ ++ ++++++ E + RSD+++ A +S E VHE S+ ++ PS
Sbjct: 2797 LEELSQTKSVSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGPTPSA 2856
Query: 277 ESR 269
+
Sbjct: 2857 NEK 2859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,518,966
Number of Sequences: 37544
Number of extensions: 445104
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -