Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_F13
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.017
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 33/109 (30%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
 Frame = +3

Query: 243 PSPPXRILGRNXPXLK-FG---------IRTTXXLGXWGXPX-PPXPXPXXPRG-PXGPG 386
           P+PP  I GR+ P L   G         + T   L     P  PP   P  P G P  P 
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 387 XXGXAGVXXPXXAGVPXVGLXPPAXLXXAXPGXXPXPXXPARPXXVXPQ 533
               A +  P  AG+P     PPA      P   P P  P       PQ
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPA-APAPPPAPAPAPAAPVASIAELPQ 496


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = +2

Query: 665  PXXXPXPRAPXXGXXPXPXGGPXAXALXAXGXPGRXAPPRXPXRASAXPXS--PGGP 829
            P   P   AP     P    GP A A    G PG  AP     + +A P S  P  P
Sbjct: 1891 PKAGPPSAAPTSALPP---AGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAP 1944


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/49 (28%), Positives = 15/49 (30%)
 Frame = +3

Query: 450 PPAXLXXAXPGXXPXPXXPARPXXVXPQXXTPXAXXXXAGXXPCXXXPP 596
           PP  +    P   P P  P  P    P    P      AG  P    PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,193
Number of Sequences: 5004
Number of extensions: 26748
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)