Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_F11
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    41   2e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.009
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.34 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   9.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +1

Query: 700 PPPPPXXXGXXXPPPPPPPP 759
           PPPPP   G   PPPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 700 PPPPPXXXGXXXPPPPPPPP 759
           PPPPP       PPPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 32.7 bits (71), Expect = 0.063
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 700 PPPPPXXXGXXXPPPPPPPP 759
           PPP P   G   PPPPPPPP
Sbjct: 752 PPPAPIMGG---PPPPPPPP 768



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 700 PPPPPXXXGXXXPPPPPPP 756
           P PPP       PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 700 PPPPPXXXGXXXP--PPPPPPP 759
           PPPPP   G   P  PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
 Frame = +1

Query: 616 PPPPKKXXXXXXXXXGGGXXXXXXKXXXPPPPPXXXGXXXPPP-----PPPPP 759
           PPPP           G G          PPP     G    PP     PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
 Frame = +1

Query: 688 KXXXPPPPPXXXGXXXPP----------PPPPPP 759
           K   PPPPP       PP          PPPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 688 KXXXPPPPPXXXGXXXPPPPPPPP 759
           K   P       G   PPPPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 700  PPPPPXXXGXXXPPPPPPPP 759
            PPPP        PP  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +1

Query: 700  PPP--PPXXXGXXXPPPPPPP 756
            PPP  PP   G    PPPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 736 PPPPPPPP 759
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 736 PPPPPPPP 759
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 736  PPPPPPPP 759
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 736 PPPPPPPP 759
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 736 PPPPPPPP 759
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 736 PPPPPPPP 759
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 706 PPPXXXGXXXPPPPPPP 756
           P P   G   PPPPP P
Sbjct: 347 PTPQVQGSRPPPPPPMP 363


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -1

Query: 755 GGGGGGGXXXPXXXGGGGGXXFFXXXXXXPPPXXXXXXXXXFXGGGG 615
           G G GG        GG GG  FF      P           F GGGG
Sbjct: 94  GAGPGGARTFHFNMGGPGGAQFF--SASDPNDIFERVFGHAFAGGGG 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,798
Number of Sequences: 5004
Number of extensions: 24960
Number of successful extensions: 325
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)