Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_F09
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709... 33 0.27
01_06_0456 + 29521282-29522064 32 0.62
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 4.4
03_05_0183 - 21681673-21682524 29 4.4
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.4
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 29 4.4
06_03_1448 + 30235336-30236763 29 5.8
06_03_1443 + 30182018-30183445 29 5.8
06_03_1440 + 30166515-30167942 29 5.8
06_03_1437 + 30151030-30152457 29 5.8
06_03_1429 + 30100834-30102261 29 5.8
06_03_1425 + 30084383-30085810 29 5.8
06_03_1420 - 30053713-30055140 29 5.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.7
>05_04_0119 -
18169729-18169887,18170515-18170653,18170728-18170974,
18171585-18171968,18172251-18172540,18172884-18173295,
18173409-18173420,18173943-18174135
Length = 611
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 78 RHLISDAHEWINEIPTFARSSLKNHYFHCFITYSVGRKRCAVDNI 212
R LI H+W T+ R+ H FH F Y ++ C++++I
Sbjct: 504 RGLIGSYHDWCEPFSTYPRTYDLLHAFHIFSHYQSRKEDCSLEDI 548
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 319 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 197
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 219 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 398
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 399 RVEQKGK 419
RV+ G+
Sbjct: 114 RVDNGGR 120
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 547 SQAFIATLLFDPSMSALPIIAKQNSPS 627
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 486 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 593
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 78 RHLISDAHEWINEIPTFARSSLKNHYFHCFITYSVGRKRCAVDNI 212
R L+ AH+W T+ R+ H F +S +KRC + +I
Sbjct: 585 RGLLGVAHDWCEPFDTYPRT---YDLLHAFSLFSKEQKRCNISSI 626
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 324 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 187
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 252 TTLHAWNETPCARRYY 205
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 260 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 349
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 339 PPQSNSPPGSVLEPDHAGVLNGDE 268
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,518,930
Number of Sequences: 37544
Number of extensions: 457860
Number of successful extensions: 1281
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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