Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_F08
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.6  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.4  
08_02_0813 + 21459776-21461128                                         28   7.9  
07_03_1067 + 23728642-23728690,23728832-23729010                       28   7.9  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   7.9  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   7.9  

>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 396 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFXLRSNSVVCRSNS 247
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 224 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 135
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 280 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 459
           +G++ C  WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 460 QL 465
           +L
Sbjct: 289 EL 290


>07_03_1067 + 23728642-23728690,23728832-23729010
          Length = 75

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 777 PXGXPXXGXPPGEXXXPASAGPXRGXP 697
           P G P  G PP +   PA   P +G P
Sbjct: 26  PPGYPPAGYPPAQGYPPAGYPPQQGYP 52


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 96  SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 251
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 394 GRGERSPRRWLQPRLAVPRQASTSVPRTP 308
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,930,702
Number of Sequences: 37544
Number of extensions: 433500
Number of successful extensions: 1111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)