Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_F07
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 270 2e-73
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 270 2e-73
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 270 2e-73
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 153 2e-38
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 145 8e-36
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 82 1e-16
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 52 7e-08
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 43 5e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 42 8e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 40 6e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 40 6e-04
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.60
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.60
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 4.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 7.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 7.4
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 270 bits (662), Expect = 2e-73
Identities = 126/144 (87%), Positives = 132/144 (91%)
Frame = +3
Query: 168 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 347
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 348 DKLKAERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGT 527
DKLKAERERGITIDIALWKFET KY VT+IDAP HR FI NMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 528 GEFXXGISXNGQTREHALLAFTLG 599
GEF GIS +GQTREHALLA+TLG
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLG 144
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 270 bits (661), Expect = 2e-73
Identities = 125/144 (86%), Positives = 132/144 (91%)
Frame = +3
Query: 168 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 347
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 348 DKLKAERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGT 527
DKLKAERERGITIDIALWKFET KY VT+IDAP HR FI NMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 528 GEFXXGISXNGQTREHALLAFTLG 599
GEF GIS +GQTREHALLA+TLG
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLG 144
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 270 bits (661), Expect = 2e-73
Identities = 125/144 (86%), Positives = 132/144 (91%)
Frame = +3
Query: 168 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 347
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 348 DKLKAERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGT 527
DKLKAERERGITIDIALWKFET KY VT+IDAP HR FI NMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 528 GEFXXGISXNGQTREHALLAFTLG 599
GEF GIS +GQTREHALLA+TLG
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLG 144
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 153 bits (372), Expect = 2e-38
Identities = 70/140 (50%), Positives = 95/140 (67%)
Frame = +3
Query: 180 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 359
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 360 AERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGTGEFX 539
ERE+G T+++ FET +++DAP H+ ++ NMI G SQAD VL++ A GEF
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 540 XGISXNGQTREHALLAFTLG 599
G GQTREHA+LA T G
Sbjct: 356 AGFERGGQTREHAVLARTQG 375
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 145 bits (351), Expect = 8e-36
Identities = 70/140 (50%), Positives = 89/140 (63%)
Frame = +3
Query: 180 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 359
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 360 AERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGTGEFX 539
ER RG+T+D+A FE+ K I DAP HR FI MI G S AD AVL+V + F
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 540 XGISXNGQTREHALLAFTLG 599
G NGQTREHA L LG
Sbjct: 295 RGFLENGQTREHAYLLRALG 314
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 81.8 bits (193), Expect = 1e-16
Identities = 53/142 (37%), Positives = 74/142 (52%)
Frame = +3
Query: 174 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 353
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 354 LKAERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGTGE 533
E+ RGITI A ++ET+ + +D P H +I NMITG + D A+++V A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 534 FXXGISXNGQTREHALLAFTLG 599
QTREH LLA +G
Sbjct: 154 MP-------QTREHLLLARQVG 168
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 52.4 bits (120), Expect = 7e-08
Identities = 35/113 (30%), Positives = 51/113 (45%)
Frame = +3
Query: 192 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 371
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 372 RGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGTG 530
RGITI+ A F + +ID P H F + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 43.2 bits (97), Expect = 5e-05
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Frame = +3
Query: 192 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 371
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 372 RGITIDIA----LWK---------------FETSKYYVTIIDAPXHRXFIXNMITGTSQA 494
+GITI A W+ FE S Y + IID P H F +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 495 DCAVLIVXAGTGEFXXGISXNGQTREH 575
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 42.3 bits (95), Expect = 8e-05
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +3
Query: 192 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 371
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 372 RGITIDI----ALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIVXAGTG 530
RGIT+ ++ + Y + +ID P H F ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 39.5 bits (88), Expect = 6e-04
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Frame = +3
Query: 168 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 338
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 339 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIV 515
+ L AE D+ + + + V +ID+P H F + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 39.5 bits (88), Expect = 6e-04
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Frame = +3
Query: 168 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 338
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 339 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIV 515
+ L AE D+ + + + V +ID+P H F + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.60
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 385 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 257
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.60
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +3
Query: 201 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 374
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 375 GITIDIALWKFETSKYYVTIIDAPXHRXFIXNMITGTSQADCAVLIV 515
G K + + + IID P H F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 99 MLFLPAERVLKTSHFRSDPSRPTV-PR 22
++ LP V+K HF DP+RP + PR
Sbjct: 367 LMLLPFPAVVKKFHFTPDPARPDIDPR 393
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 409 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 278
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -2
Query: 161 LVTDYKLRVISEIDSNRMDEKCSF----FQLNECSKQVTSVLT 45
L+T Y+L + DSN + +CS L +K + SVLT
Sbjct: 937 LITAYQLLKVFNTDSNDLVRECSIRASSVSLGSIAKTIPSVLT 979
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 375 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 277
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 354 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 226
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,832
Number of Sequences: 5004
Number of extensions: 42151
Number of successful extensions: 143
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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