Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_F05
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    22   8.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.2 bits (45), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 592 GXPPPXXPPP 563
           G PPP  PPP
Sbjct: 774 GPPPPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 595 GGXPPPXXPP 566
           GG PPP  PP
Sbjct: 759 GGPPPPPPPP 768


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 595 GGXPPPXXPPPXXXXFF 545
           GG PPP  PPP    F+
Sbjct: 303 GGLPPPPPPPPPSNDFW 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 810,936
Number of Sequences: 5004
Number of extensions: 5106
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)