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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_F01
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.083
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.19 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.33 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.44 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   4.1  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   5.4  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   7.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +1

Query: 655  AXXPPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPPRWXXPA 795
            A  PP+  P   PP P P   PP   +   A     P P P    P+
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 18/60 (30%), Positives = 19/60 (31%)
 Frame = +1

Query: 613  PSXRAPXXXXXXGXAXXPPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPPRWXXP 792
            P+   P      G    PP   P P P    P    P G  P PA     P P P    P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPP---PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP 1102



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
 Frame = +1

Query: 568  PTRXSPLRXPSDXAXP----SXRAPXXXXXXGX--AXXPPLAXPP-PXPPXPXPXXXPPX 726
            P+   P+  PS  A P    S   P      G      P +A PP P P    P   P  
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147

Query: 727  GXAPXPARGXXXPXPPPRWXXP 792
               P PA     P P P    P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAP 1169



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
 Frame = +1

Query: 568  PTRXSPLRXPSDXAXPSXRAPXXXXXXGXAXXPPLAXPP-PXPPXPXPXXXPPXGXAPXP 744
            P+   P+  PS  A P    P           P    PP P P    P   P  G  P P
Sbjct: 1155 PSGAPPVPKPSVAAPP---VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211

Query: 745  ARGXXXPXPPPRWXXP 792
                  P P P    P
Sbjct: 1212 PPSTAPPVPTPSAGLP 1227



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
 Frame = +1

Query: 580  SPLRXP--SDXAXPSXRAPXXXXXXGXAXXPPL--AXPPPXP-PXPXPXXXPPXGXAPXP 744
            +PL  P  +  A P  R P        A   PL  A  PP P P   P    P    P P
Sbjct: 994  APLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053

Query: 745  ARGXXXPXPPPRWXXPA 795
                  P  PP    P+
Sbjct: 1054 KSSSGAPSAPPPVPAPS 1070



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 664  PPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPP 774
            PP+  P   PP P      P    P PA     P  P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +1

Query: 664  PPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPPRWXXP 792
            PP+  P   PP P P    P    P P+ G   P P P    P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAP--PVPAPSSG-IPPVPKPAAGVP 1189



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
 Frame = +1

Query: 613  PSXRAPXXXXXXGX--AXXPPLAXPP-PXPPXPXPXXXPPXGXAPXPARGXXXPXPP 774
            PS  AP      G      P +A PP P P    P   P     P PA     P  P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
 Frame = +1

Query: 595  PSDXAXPSXRAPXXXXXXGXAXXPPLAXPPPXPPXP------XPXXXPPXGXAPXPARGX 756
            P     PS   P      G    PP+  P   PP P       P   P     P PA   
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGA---PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 757  XXPXPPPRWXXP 792
              P P P    P
Sbjct: 1120 APPVPKPSVAAP 1131


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +1

Query: 670 LAXPPPXPPX---PXPXXXPPXGXAPXPARGXXXPXPPP 777
           L  PPP PP    P P   P     P P  G   P PPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +1

Query: 667 PLAXPPPXP-PXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           P   P P P P P P    P    P P      P PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 667 PLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           P+  PPP P    P   PP    P    G   P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 664 PPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           P  A  P  PP P     PP    P  A     P PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +1

Query: 664 PPLAXPPPXPPXP-XPXXXPPXGXAPXPA 747
           P +  PPP PP P      PP    P PA
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 691 PPXPXPXXXPPXGXAPXPARGXXXPXPPPRWXXPA 795
           PP P P      G  P P +G   P PPP    P+
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 39/147 (26%), Positives = 42/147 (28%), Gaps = 2/147 (1%)
 Frame = +1

Query: 313 PR-NACGGLTWYC*TRLQPPPGTTLSAPVYLITAPXPX*SAXTXAPXFLCXPTXXPXXXP 489
           PR NA G +      R  PPP    SAP      P P  S+   +      P       P
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPS-TGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401

Query: 490 HLXXXXPGSXXXXPWTXXXXXXXXXXPTRXSPLRXPSDXAXPSXRAPXXXXXXGXAXXPP 669
            L      S    P            P    P   PS    P                PP
Sbjct: 402 ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS---LPMGAPAAPPLPPSAPIAPP 458

Query: 670 L-AXPPPXPPXPXPXXXPPXGXAPXPA 747
           L A  P  PP P     PP   AP PA
Sbjct: 459 LPAGMPAAPPLPPAAPAPPPAPAPAPA 485



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 679 PPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPPR 780
           PPP PP       PP G     +     P PPPR
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNS-SLPPPPPPPR 344



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
 Frame = +1

Query: 598 SDXAXPSXRAPXXXXXXGXAXXPPLAXPPPXPPXPXPXXXPPXGXAPXP---ARGXXXPX 768
           S+ + P    P      G    PP     P PP P     P  G  P P   +R    P 
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP--RSAPSTGRQPPPLSSSRAVSNPP 389

Query: 769 PPP 777
            PP
Sbjct: 390 APP 392



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
 Frame = +1

Query: 571 TRXSPLRXPSDXAXPSXRAPXXXXXXGXAXXPPLAXPPPX------PPXPXPXXXPPXGX 732
           T  S    P   + PS R P           PP+  PPP       PP   P    P   
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPI--PPPSNGTVSSPPNSPPRPIAPVSM 280

Query: 733 APXPARGXXXPXPPP 777
            P        P PPP
Sbjct: 281 NPAINSTSKPPLPPP 295


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +1

Query: 568  PTRXSPLRXPSDXAXPSXRAPXXXXXXGXAXXPPLAXPPPXPPXPXPXXXPPXGXAPXPA 747
            P    P+R P   A P   AP           PP++ PPP    P P   P     P PA
Sbjct: 1686 PVSTPPVR-PQSAAPPQMSAPTPPP-------PPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = +1

Query: 664  PPLAXPP----PXPPXPXPXXXPPXGXAPXPARGXXXPXPP 774
            P  A PP    P PP P     PP    P PA     P PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 655  AXXPPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
            A  P ++ P P PP   P   PP   AP    G     PPP
Sbjct: 1697 AAPPQMSAPTPPPP---PMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/57 (26%), Positives = 16/57 (28%)
 Frame = +1

Query: 625  APXXXXXXGXAXXPPLAXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPPRWXXPA 795
            AP      G     P     P PP P     P     P P+        PP    PA
Sbjct: 1456 APVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPA 1512


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 208 VRVHRADTGRSSNELDRQTTELERR 282
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = -1

Query: 797 GAGXXXRGGGXGXXXPRAGXGAXPXGGXXXGXGXGGXGG-GMAXGGXQAXP 648
           G G    GGG G   P  G      G    G   GG GG G   GG +  P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = -1

Query: 794 AGXXXRGG-GXGXXXPRAGXGAXPXGGXXXGXGXGGXGGGMAXG 666
           AG   RGG   G    R G G    GG   G   GG GGG   G
Sbjct: 135 AGRGGRGGFRGGRGGSRGGFGGNSRGGFGGG-SRGGFGGGSRGG 177


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
 Frame = +1

Query: 667 PLAXPPPXPPXPXPXXXPPXGXAPXPAR-----GXXXPXPPP 777
           PL  PPP PP   P         P P+R     G     PPP
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPP 275


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 655 AXXPPLAXPPPXPPXPXPXXXPPXGXAPXPARG 753
           A  PP   PPP PP   P   PP    P P  G
Sbjct: 2   ASLPPGNPPPPPPP---PGFEPPSQPPPPPPPG 31


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 131 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 33
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 113 TRSSQRTIGSLPPHSKIVVNLTLHLRHANI 202
           T S+Q  + S+  H+K+ +NLTL+L  +++
Sbjct: 463 TLSAQIAVQSVSSHAKLGMNLTLYLTFSSV 492


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 277 VPTQSFVDPIHLKICQYPHGGL 212
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 679 PPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           PPP  P P          AP  A     P PPP
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPP 399


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 685 PXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           P PP P P         P P R    P  PP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 664 PPLAXPP-PXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           PP + PP P  P P P   PP    P  A       PPP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPP---IPSKAPPIPSSLPPP 174



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +1

Query: 673 AXPP--PXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
           A PP  P PP P     PP    P P+     P   P
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP 158


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +1

Query: 673  AXPPPXPPXPXPXXXPPXGXAPXPARGXXXPXPPP 777
            A PPP PP   P   PP   AP  A     P  PP
Sbjct: 1880 AAPPPPPPMALPKAGPP-SAAPTSA---LPPAGPP 1910


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -1

Query: 194 HVSNAGSG*LRFWSAGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNQNN 27
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 26  ISRRH 12
             RRH
Sbjct: 490 GIRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -1

Query: 194 HVSNAGSG*LRFWSAGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNQNN 27
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 26  ISRRH 12
             RRH
Sbjct: 490 GIRRH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,475
Number of Sequences: 5004
Number of extensions: 42934
Number of successful extensions: 250
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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