Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E22
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.8  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   2.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.4  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.4  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 399 SLTIFPGSPPTHLALFADDTTVYYSSR-NKFLIAKKLQSAALALGQW 536
           S+  FPG    H A   DDT   Y  R NK LI  +L +   +  +W
Sbjct: 290 SIGRFPGPREGHQATTIDDTVYIYGGRDNKGLILNELWAFNYSQQRW 336


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 50  KGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLI 229
           KG+  D+ F F T  S +   HR+   +L   +  K +  G  + D  K   K W +G  
Sbjct: 289 KGLSHDDVFLFPTGMSAIYNTHRILRLVLD--DSRKSVCFGFCYVDTLKILQK-WGSGCY 345

Query: 230 F 232
           F
Sbjct: 346 F 346


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 390 LAYSLTIFPGSPPTHLALFADDTTVYYSS 476
           L+Y L +FP S P    L AD   +YY S
Sbjct: 176 LSYGLILFPISDPLFKNLGADGLAIYYVS 204



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 485 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLHTDF 616
           +P REE S + P  +  V      + PS+K  G +S  K++  F
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFF 148


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 316 DSISKRAVRQEVPYDEHETIRHTHVE*FENQTVVPDFVERFCDVEEESS 170
           +S+   +  + VP  +HE I     +  E+ T +P  ++R C++ +ESS
Sbjct: 275 NSLDNESCVRVVPSFDHEEIGSVSAQGAES-TFLPAVLQRICELGKESS 322


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 519 GLRSEASSRLGTCFYWNSKQSCRRRIKLNGSAATRGI-SLTNKLNRRGE 376
           GL+S    +  TCFY N K   + +I+   S  T  I   TN ++ +G+
Sbjct: 17  GLKSTFGDKTVTCFYCNKK---KEKIRDGTSTWTCSICEATNHIDEKGD 62


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 48  PKAFSSMNNSDSVQITHAFNRCTASRSTFLWGLIDQNRYT 167
           PKA SS+  + S Q++ +FN   A    F  G I  N  T
Sbjct: 172 PKARSSLPENSSEQVSSSFNSRVAHNRNFSDGPIVTNLET 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,460
Number of Sequences: 5004
Number of extensions: 72423
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)