Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_E21
(876 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 34 0.59
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 34 0.59
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 34 0.59
X07516-1|CAA30394.2| 297|Homo sapiens salivary proline-rich pro... 31 5.5
S62928-1|AAB27288.2| 297|Homo sapiens PRB1M protein precursor p... 31 5.5
S52986-1|AAA13341.2| 331|Homo sapiens basic salivary proline-ri... 31 5.5
M97220-1|AAB05816.1| 331|Homo sapiens salivary proline-rich pro... 31 5.5
K03204-1|AAA60185.1| 331|Homo sapiens PRB1 protein. 31 5.5
BC044827-1|AAH44827.1| 338|Homo sapiens PRB2 protein protein. 31 5.5
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 31 7.2
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 31 7.2
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 31 7.2
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.59
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +2
Query: 263 QTTEFGNPGGXG-AXPLWVXS----PEXXXGGXXGXXVKPGGXXXRGEXX--SPXPXFFX 421
+TT+ G G G A P S P+ G PGG G P P F
Sbjct: 173 KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPA 232
Query: 422 KQXPPXXAKXPXGLXXPPSXSPPKKXXPP 508
Q PP P G PP PP + PP
Sbjct: 233 GQTPPRPPLGPPGPPGPPGPPPPGQVLPP 261
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.59
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +2
Query: 263 QTTEFGNPGGXG-AXPLWVXS----PEXXXGGXXGXXVKPGGXXXRGEXX--SPXPXFFX 421
+TT+ G G G A P S P+ G PGG G P P F
Sbjct: 173 KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPA 232
Query: 422 KQXPPXXAKXPXGLXXPPSXSPPKKXXPP 508
Q PP P G PP PP + PP
Sbjct: 233 GQTPPRPPLGPPGPPGPPGPPPPGQVLPP 261
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.59
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +2
Query: 263 QTTEFGNPGGXG-AXPLWVXS----PEXXXGGXXGXXVKPGGXXXRGEXX--SPXPXFFX 421
+TT+ G G G A P S P+ G PGG G P P F
Sbjct: 173 KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPA 232
Query: 422 KQXPPXXAKXPXGLXXPPSXSPPKKXXPP 508
Q PP P G PP PP + PP
Sbjct: 233 GQTPPRPPLGPPGPPGPPGPPPPGQVLPP 261
>X07516-1|CAA30394.2| 297|Homo sapiens salivary proline-rich
protein protein.
Length = 297
Score = 31.1 bits (67), Expect = 5.5
Identities = 36/160 (22%), Positives = 39/160 (24%), Gaps = 2/160 (1%)
Frame = +2
Query: 362 KPGGXXXRGEXXSPXPXFFXKQXPPXXAKXPXGLXXPPSXSPPKKXXPPXXXXXXPXXXG 541
KP G G+ P P Q P P G P + P+ PP P G
Sbjct: 94 KPQGPPPPGKPQGPPPQGDKSQSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPQQG 152
Query: 542 RXRXXXXXAXG--XXXPTXXKXXLXXPXXPXSGSXXXXCXXLQSXPPXXXXGXXXGLAPX 715
R G P P Q P G G P
Sbjct: 153 GNRPQGPPPPGKPQGPPPQGDKSRSPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 212
Query: 716 GAXGXPPASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
G G P PP P P G A G P
Sbjct: 213 G--GNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGP 250
>S62928-1|AAB27288.2| 297|Homo sapiens PRB1M protein precursor
protein.
Length = 297
Score = 31.1 bits (67), Expect = 5.5
Identities = 36/160 (22%), Positives = 39/160 (24%), Gaps = 2/160 (1%)
Frame = +2
Query: 362 KPGGXXXRGEXXSPXPXFFXKQXPPXXAKXPXGLXXPPSXSPPKKXXPPXXXXXXPXXXG 541
KP G G+ P P Q P P G P + P+ PP P G
Sbjct: 94 KPQGPPPPGKPQGPPPQGDKSQSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPQQG 152
Query: 542 RXRXXXXXAXG--XXXPTXXKXXLXXPXXPXSGSXXXXCXXLQSXPPXXXXGXXXGLAPX 715
R G P P Q P G G P
Sbjct: 153 GNRPQGPPPPGKPQGPPPQGDKSQSPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 212
Query: 716 GAXGXPPASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
G G P PP P P G A G P
Sbjct: 213 G--GNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGP 250
>S52986-1|AAA13341.2| 331|Homo sapiens basic salivary proline-rich
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 5.5
Identities = 36/160 (22%), Positives = 39/160 (24%), Gaps = 2/160 (1%)
Frame = +2
Query: 362 KPGGXXXRGEXXSPXPXFFXKQXPPXXAKXPXGLXXPPSXSPPKKXXPPXXXXXXPXXXG 541
KP G G+ P P Q P P G P + P+ PP P G
Sbjct: 128 KPQGPPPPGKPQGPPPQGDKSQSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPQQG 186
Query: 542 RXRXXXXXAXG--XXXPTXXKXXLXXPXXPXSGSXXXXCXXLQSXPPXXXXGXXXGLAPX 715
R G P P Q P G G P
Sbjct: 187 GNRPQGPPPPGKPQGPPPQGDKSRSPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 246
Query: 716 GAXGXPPASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
G G P PP P P G A G P
Sbjct: 247 G--GNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGP 284
>M97220-1|AAB05816.1| 331|Homo sapiens salivary proline-rich
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 5.5
Identities = 36/160 (22%), Positives = 39/160 (24%), Gaps = 2/160 (1%)
Frame = +2
Query: 362 KPGGXXXRGEXXSPXPXFFXKQXPPXXAKXPXGLXXPPSXSPPKKXXPPXXXXXXPXXXG 541
KP G G+ P P Q P P G P + P+ PP P G
Sbjct: 128 KPQGPPPPGKPQGPPPQGDKSQSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPQQG 186
Query: 542 RXRXXXXXAXG--XXXPTXXKXXLXXPXXPXSGSXXXXCXXLQSXPPXXXXGXXXGLAPX 715
R G P P Q P G G P
Sbjct: 187 GNRPQGPPPPGKPQGPPPQGDKSRSPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 246
Query: 716 GAXGXPPASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
G G P PP P P G A G P
Sbjct: 247 G--GNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGP 284
>K03204-1|AAA60185.1| 331|Homo sapiens PRB1 protein.
Length = 331
Score = 31.1 bits (67), Expect = 5.5
Identities = 36/160 (22%), Positives = 39/160 (24%), Gaps = 2/160 (1%)
Frame = +2
Query: 362 KPGGXXXRGEXXSPXPXFFXKQXPPXXAKXPXGLXXPPSXSPPKKXXPPXXXXXXPXXXG 541
KP G G+ P P Q P P G P + P+ PP P G
Sbjct: 128 KPQGPPPPGKPQGPPPQGDKSQSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPQQG 186
Query: 542 RXRXXXXXAXG--XXXPTXXKXXLXXPXXPXSGSXXXXCXXLQSXPPXXXXGXXXGLAPX 715
R G P P Q P G G P
Sbjct: 187 GNRPQGPPPPGKPQGPPPQGDKSRSPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 246
Query: 716 GAXGXPPASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
G G P PP P P G A G P
Sbjct: 247 G--GNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGP 284
>BC044827-1|AAH44827.1| 338|Homo sapiens PRB2 protein protein.
Length = 338
Score = 31.1 bits (67), Expect = 5.5
Identities = 36/160 (22%), Positives = 39/160 (24%), Gaps = 2/160 (1%)
Frame = +2
Query: 362 KPGGXXXRGEXXSPXPXFFXKQXPPXXAKXPXGLXXPPSXSPPKKXXPPXXXXXXPXXXG 541
KP G G+ P P Q P P G P + P+ PP P G
Sbjct: 135 KPQGPPPPGKPQGPPPQGDKSQSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPQQG 193
Query: 542 RXRXXXXXAXG--XXXPTXXKXXLXXPXXPXSGSXXXXCXXLQSXPPXXXXGXXXGLAPX 715
R G P P Q P G G P
Sbjct: 194 GNRPQGPPPPGKPQGPPPQGDKSRSPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 253
Query: 716 GAXGXPPASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
G G P PP P P G A G P
Sbjct: 254 G--GNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGP 291
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 710 PXGAXGXP-PASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
P G G P P PP P PG G + G P G + P
Sbjct: 2045 PPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEP 2087
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 710 PXGAXGXP-PASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
P G G P P PP P PG G + G P G + P
Sbjct: 2077 PPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEP 2119
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 710 PXGAXGXP-PASPPXPXGXXXXPGXGXXXQXGAPXXXGXRXXP 835
P G G P P PP P PG G + G P G + P
Sbjct: 716 PPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEP 758
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,575,508
Number of Sequences: 237096
Number of extensions: 1656348
Number of successful extensions: 6423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6173
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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