Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E14
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 671 PPPPPPXXXGGGXXXXXPP 727
           PPPPPP   G G     PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = +1

Query: 571 GXPPPFXXPPXXKKKXXGGGGGXPPXFX*XKKXPPPPPPXXXGGGG 708
           G PPP   PP       G  G  PP        PPPPPP     GG
Sbjct: 759 GGPPPPPPPP-------GVAGAGPP--------PPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 672 PPPPPXXXRGGGXXXXXPPXXXXXXPPP 755
           P PPP    GG      PP      PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 641 PPXFXNXKXRPPPPPPXXXGGGXXXXXPP 727
           PP        PPPPPP    G      PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 581 PLXSXRPXXKKXXXGGGGGXPPXFXNXKXRPPPPPPXXXGGGXXXXXP 724
           P+    P         G G PP        PPPPPP    GG     P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPP--------PPPPPPAVSAGGSRYYAP 795



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 577 PPPFXXPPXXKKKXXGGGGGXPPXFX*XKKXPPPPPP 687
           P P   PP       GG    PP        PPPPPP
Sbjct: 746 PAPIPVPPPAP--IMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 639 APPLXXXKKXAPPPPPXXXRGGGXXXXXPPXXXXXXPPP 755
           A  L   KK  PPPPP   R  G             PPP
Sbjct: 301 AAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 656 NXKXRPPPPPPXXXGGGXXXXXPPXXXXXXPP 751
           N    PPPPPP     G     P       PP
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +3

Query: 672 PPPPPXXXRGGGXXXXXPPXXXXXXPPP 755
           PPPPP            PP      PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -1

Query: 707 PPPPXXXGGGGGGXFFXXXKXGGXPPPPP 621
           PPPP       G            PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +3

Query: 672 PPPPPXXXRGGGXXXXXPPXXXXXXPPP 755
           PPPPP      G     P       PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -1

Query: 707 PPPPXXXGGGGGGXFFXXXKXGGXPPPPP 621
           PPPP        G      +    PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 640 PPXFX*XKKXPPPPPP 687
           PP F    + PPPPPP
Sbjct: 15  PPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,550
Number of Sequences: 5004
Number of extensions: 31141
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)