Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_E13
(822 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.16
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.21
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.21
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.21
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.21
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.21
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.21
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.21
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.21
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.85
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 2.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.5
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 7.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 7.9
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 205 VNLTLHLRHANIRESESTVRIRAXLQMNWIDKRLSW 312
++ L ++H N+ E TV L++ W L+W
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTW 97
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 235 NIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.85
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 196 KIVVNLTL-HLRHANIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 238 IRESESTVRIRAXLQMNWIDKRLSWNXG 321
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.5
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +1
Query: 163 QRTIGTPPPYSKIVVNLTLHLRHANIRESESTVRIRAXLQMNWIDKRLSWNXGXVG 330
+R +G + LTL ++ ++ E + L++ W D + WN G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.8 bits (44), Expect = 7.9
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 196 KIVVNLTLHL--RHANIRESESTVRIRAXLQMNWIDKRLSW 312
+I N+T+ L + + S + + + + + W D LSW
Sbjct: 66 QIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSW 106
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 7.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 329 GCXTXLVSSERLWTPDL 379
G T V SE +W PD+
Sbjct: 91 GVDTLHVPSEHIWLPDI 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,021
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -