Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E11
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 222 EPRPGEGAIRARRLQSRRSVLEAWSRRLANPSAGLRTVEAVCPVLAEWANRDQGV 386
           +PR G+GA   +R     S    W   L      L      CP   +W NR++GV
Sbjct: 439 KPRQGDGAA-VKRKSREGSTTYLWEFLLK-----LLQDREYCPRYIKWTNRERGV 487


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 211 ATGGNHVPEKERL----ERGGS 264
           A GGNH+P  E+L     RGGS
Sbjct: 134 AAGGNHLPFHEKLVESFPRGGS 155


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -3

Query: 230  TWFPPVAKVTSPRIIGGERLRLQVPGRRPGENARRLEGDG 111
            TW PP+ ++    I G      +     P  N   + GDG
Sbjct: 1026 TWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDG 1065


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -3

Query: 230  TWFPPVAKVTSPRIIGGERLRLQVPGRRPGENARRLEGDG 111
            TW PP+ ++    I G      +     P  N   + GDG
Sbjct: 1022 TWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDG 1061


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,804
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)