Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E09
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.60 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   5.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 21/56 (37%), Positives = 22/56 (39%)
 Frame = +2

Query: 242 PXPPPXFFXGGGXPXXPXPPLFFXXGGXPXGGXPPPPPPXKXGGXXKKKKPPXXXE 409
           P PPP    GG  P  P PP      G P    PPPPPP    G  +   P    E
Sbjct: 750 PVPPPAPIMGG--PPPPPPPPGVAGAGPPP---PPPPPPAVSAGGSRYYAPAPQAE 800



 Score = 33.5 bits (73), Expect = 0.037
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 242 PXPPPXFFXGGGXPXX-PXPPLFFXXGGXPXGGXPPPPPPXKXGGXXKKKKPP 397
           P PPP        P   P PP     GG P    PPPPPP   G       PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP----PPPPPPGVAGAGPPPPPPP 781



 Score = 29.5 bits (63), Expect = 0.60
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +2

Query: 242 PXPPPXFFXGGGXPXXPXPPLFFXXGGXPXGGXPPPPPP 358
           P PPP    G G P  P PP     GG       P   P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 242 PXPPPXFFXGGGXPXXPXPPLFFXXGGXPXGGXPPPPPPXK 364
           P PPP     G  P  P PP     G       P   P  K
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 372 PPXFXGGGGGGXPPXGXPPXXKKRGG 295
           PP   G  G G PP   PP     GG
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +2

Query: 275 GXPXXPXPPLFFXXGGXPXGGXPPPPPPXKXGGXXKKKK 391
           G P  P PP     G  P    PPPPPP    G  KK+K
Sbjct: 7   GNPPPPPPP----PGFEPPSQPPPPPPP----GYVKKRK 37



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 326 PXGGXPPPPPPXKXGGXXKKKKPP 397
           P G  PPPPPP       +   PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 251 PPXFFXGGGXPXXPXPPLFFXXGGXPXGGXPPPPPP 358
           P  ++  G       PP +      P    PPPPPP
Sbjct: 209 PDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +2

Query: 281 PXXPXPPLFFXXGGXPX---GGXPPPPPPXKXGGXXKKKKPP 397
           P  P PP     G  P    G   PPPPP +      ++ PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
 Frame = +2

Query: 281 PXXPXPPLFFXXGGXPXGGX------PPPPPPXKXGGXXKKKKPP 397
           P  P PP     G  P G        PPPPPP +         PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 317 GGXPXGGXPPPPPP 358
           G    GG PPPPPP
Sbjct: 298 GDSANGGLPPPPPP 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,187
Number of Sequences: 5004
Number of extensions: 34164
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)