Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_E07
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 104 1e-23
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.58
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 28 1.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.4
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.1
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 9.5
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 104 bits (250), Expect = 1e-23
Identities = 52/101 (51%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Frame = +1
Query: 274 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 450
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 451 VDKPSTPAPTK*FHG*NVF*KSKRXVIWAXSIRKVTGCLIV 573
+DKP+ P+ + + ++ KVTGCLI+
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLII 109
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 328 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 417
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 331 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 441
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 365 ALTITRRYHSATRL*NAPSLITSNLASSTSTNRAPQLPRSSFMDKTYFKSRKD 523
+L ++ H ++PSL +N SS+ T Q P SSF + F + +D
Sbjct: 188 SLNLSSLSHELQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQFNASQD 240
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 343 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVD 456
++DR + + NH +P P +P K P+ + ++ N D
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGD 195
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 322 KRCPASSRSPKVRF*SRQLSEKLPTKHHPCFFSFSSLKVCRYRAAVPPSF 173
KRC A+++ ++ R+L E LP K P S S+ Y +++ P F
Sbjct: 23 KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 356 KRSKFFNNKGQ*AVSSFFT 300
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 40 YGRALCYIFKVLSIN 84
YG+ L ++FKVLSIN
Sbjct: 79 YGKQLPFLFKVLSIN 93
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 9.5
Identities = 26/111 (23%), Positives = 42/111 (37%)
Frame = +1
Query: 145 VRKDTC*FIKMTEVLQPGNDTLSEKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAY 324
+++D + ++ G S K +K NK ++ G+ PS SV +++
Sbjct: 136 MKEDITPVVNTSKQSSTGTQEESSKPEKSNKL-LAKSTLSLYGNQAFNPS-SVLPSNSSS 193
Query: 325 WPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSTPAP 477
P ++ NV Y P F SPLK S PS+ P
Sbjct: 194 TP----KENKKNVNKETYQPNTFRRSPLKNDTGSVELSNLYMPSPPSSALP 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,499
Number of Sequences: 5004
Number of extensions: 50939
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -