Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_E07
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 105 4e-23
03_03_0094 + 14378953-14380728 99 2e-21
11_06_0293 + 22018128-22018556 46 5e-05
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 46 5e-05
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 45 8e-05
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 34 0.12
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 28 7.6
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 7.6
>07_03_1408 - 26353389-26355191
Length = 600
Score = 105 bits (252), Expect = 4e-23
Identities = 52/99 (52%), Positives = 66/99 (66%), Gaps = 9/99 (9%)
Frame = +1
Query: 205 TLSEKKKKKNKDGVSLGAFQT---------IGDFKIEPSESVKKLDTAYWPLLLKNFDRL 357
T S+KKK K+KD + A + I+P V LDT+ WPLLLKN+DRL
Sbjct: 17 TKSKKKKIKSKDAATAAAVDPPSLAEAEAKTDGYLIKPQSLVPSLDTSTWPLLLKNYDRL 76
Query: 358 NVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSTPA 474
NVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPS P+
Sbjct: 77 NVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPS 115
Score = 58.0 bits (134), Expect = 8e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +3
Query: 465 HPSSHEVVSWIKRILKVEKTGHLGTLDPKSYG 560
+PSSHEVV+WIKR+L+V+KTGH GTLDPK G
Sbjct: 113 NPSSHEVVAWIKRLLRVDKTGHSGTLDPKVTG 144
>03_03_0094 + 14378953-14380728
Length = 591
Score = 99 bits (238), Expect = 2e-21
Identities = 42/66 (63%), Positives = 53/66 (80%)
Frame = +1
Query: 277 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVD 456
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+D
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLD 113
Query: 457 KPSTPA 474
KPS P+
Sbjct: 114 KPSNPS 119
Score = 59.3 bits (137), Expect = 4e-09
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +3
Query: 465 HPSSHEVVSWIKRILKVEKTGHLGTLDPKSYG 560
+PSSHEVV+WIKR+L+VEKTGH GTLDPK G
Sbjct: 117 NPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTG 148
>11_06_0293 + 22018128-22018556
Length = 142
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 483 VVSWIKRILKVEKTGHLGTLDPKSYG 560
VV+WIKR+L+V KTGH GTLDPK G
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTG 84
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 483 VVSWIKRILKVEKTGHLGTLDPKSYG 560
VV+WIKR+L+V KTGH GTLDPK G
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTG 123
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 44.8 bits (101), Expect = 8e-05
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 474 SHEVVSWIKRILKVEKTGHLGTLDPKSYG 560
SHEV++W K +L +EKT H GTLDPK G
Sbjct: 43 SHEVITWNKNLLHIEKTSHNGTLDPKVTG 71
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 397 NSPLKRPISDYVKSGFINVDKPS 465
+SPLK+PI+ ++ G IN++KPS
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPS 39
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 471 SSHEVVSWIKRILKVEKTGHLGTLDPKSYGL 563
+S V ++R++ V+K GH GTLDP + GL
Sbjct: 318 TSFTVCGKLRRLVNVQKVGHAGTLDPMATGL 348
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 428 TSNLASSTSTNRAPQLP-RSSFMDKTYFKSRKDXSFG 535
+ + +SST ++RAP P RSSF KT +++ +G
Sbjct: 273 SKHASSSTPSSRAPSAPQRSSFEQKTNYQTPASALYG 309
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 211 SEKKKKKNKDGVSLGAFQTIGDFK-IEPSESVKKLDTA 321
SEK ++ N+DG S+ A I DF E ++ + DTA
Sbjct: 1609 SEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTA 1646
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,755
Number of Sequences: 37544
Number of extensions: 336329
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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