Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E06
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542...    29   4.2  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    29   5.6  
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    28   7.4  
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621           28   7.4  
01_01_0693 + 5355081-5355106,5355969-5356056,5356079-5356141,535...    28   7.4  
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501...    28   9.8  
04_03_0028 + 9698427-9698849,9698862-9699227                           28   9.8  

>04_04_1248 -
           32051679-32052356,32053617-32053778,32054147-32054269,
           32054686-32054793
          Length = 356

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 340 TRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLSP 212
           T LS +P L+ L +KP       A  T+K    V  G G LSP
Sbjct: 136 TNLSISPSLSLLHVKPRTSAKPTASTTAKNARRVGVGAGSLSP 178


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 406 EERVPSTRYRKERFDKKSRM-MSTRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNG 230
           E++  S   +   FD  + + M T  SG   +NS+ ++P+ + + ++       AP Y+ 
Sbjct: 541 EQQETSNNKKTNGFDNTAAVSMDTLKSGDDSMNSVVVEPIKERVESSKTDVDTAAPFYSF 600

Query: 229 FGRLS 215
             RLS
Sbjct: 601 VKRLS 605


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 249 LFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRXLTAG 428
           L  D  KAFD + H+ ++  + +MG P   +  ++   S  S    + G   +      G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513

Query: 429 VPQG 440
           V QG
Sbjct: 514 VRQG 517


>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
          Length = 283

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 657 GXXPXXPPVLGGEFPPP 707
           G  P  PP  GGEFPPP
Sbjct: 47  GDLPPPPPDDGGEFPPP 63


>01_01_0693 +
           5355081-5355106,5355969-5356056,5356079-5356141,
           5356607-5356705
          Length = 91

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 156 RTNHSCVQQVHRLTEHILVGLN--RPKPLYTGALFFDVAKAFDKVWHNGLIFKLFN 317
           RTN  CV++   +   +LVG N    K +  G L   VA   D  W  G I    N
Sbjct: 21  RTNGKCVKETEAIRSELLVGENGINDKQIKKGLL---VASRVDGEWSRGTIGDALN 73


>08_02_0758 +
           20848078-20849579,20849660-20849850,20849944-20850179,
           20850254-20850973
          Length = 882

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 703 PPXXPXXNPTPGXKGXXXGXPXXXXKIP 786
           PP  P  NP P  KG   G P     +P
Sbjct: 430 PPPPPQKNPPPNLKGQCYGQPPPPPPLP 457


>04_03_0028 + 9698427-9698849,9698862-9699227
          Length = 262

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 307 LKIKPLCQTLSNAFATSKKRAPVY--NGFGRLSP 212
           L++KPL Q L NAF    K APV     F ++ P
Sbjct: 226 LELKPLPQGLHNAFLHGDKEAPVVISTSFPKMKP 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,178,118
Number of Sequences: 37544
Number of extensions: 359700
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)