Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E04
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.2  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   7.2  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   7.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 194 LPSSLHQK*DQDSTLTGVTCLNMF-EVQQKKKHDADQNTSSGTPQERECSIRKSCNNVSV 370
           LP  L +   ++   T  +C   F EVQ++K+ + D+    G    ++ S+R+  + +  
Sbjct: 27  LPPDLLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQ- 85

Query: 371 TSMEDLSHE 397
            SM  LS +
Sbjct: 86  -SMSQLSEK 93


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 464  FTNGNTTRNKLLQEIKASANLK*NRSQ*WICHDEWVVPT-----RIVFKPMTTARV 616
            F N   + ++L+  ++ SA +       +IC DE  +PT      ++ KP+T   +
Sbjct: 1271 FGNDKVSSSRLMYSVRTSATINSRVPFVYICEDETCIPTDLQSDGVLLKPITCENI 1326


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 356 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNT 481
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = +2

Query: 275  QKKKHDADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEE---------IVTSYVLAH 427
            +K+K    Q   SG   +   SIRK+C N+ +     L H           +  +Y +A 
Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHALNPFEANYWVPINYSVAA 1775

Query: 428  VAQFDCRLHHMA 463
               +DC L+  +
Sbjct: 1776 STAYDCHLYEQS 1787


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +3

Query: 678 STQFNTNNTTRSMTSGSSKQANKK 749
           ST++++NN  +S++SGS+ + +K+
Sbjct: 617 STEWSSNNERQSLSSGSNDEEDKE 640


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 745 LFACLLEPEVIERVVLLVLN*VDSKISATIHRLMSWFTVLVPCNSSSSHWLKNDSCRYYP 566
           + AC L+P++   +  L+ N  +  I+A  H L    T+L    + +S     DS   Y 
Sbjct: 505 VLACRLDPKIDNTISALLENGNNKVINANCHLLRELVTLLPASTAYTSSPYGGDSFYNYV 564

Query: 565 L 563
           L
Sbjct: 565 L 565


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 675  ESTQFNTNNTTRSMTSGSSKQANKKASKFPRG 770
            ++++ N    T S  + +SK AN+K + FPRG
Sbjct: 1625 KASKVNLLTPTISNGTRASKHANEKENTFPRG 1656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,500
Number of Sequences: 5004
Number of extensions: 61055
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)