Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E04
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    32   0.46 
09_02_0559 + 10666974-10667078,10667251-10667614,10671204-106715...    30   2.5  
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701...    29   3.3  
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     29   3.3  
02_01_0700 + 5229681-5229719,5230235-5230334,5230406-5230463,523...    29   3.3  
04_04_1221 + 31845938-31847038                                         28   9.9  

>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 266 EVQQKKKHDADQNTSSG----TPQERECSIRKSCNNVSV-TSMEDLSHEEIV 406
           E++QK  HDA  N + G    T   +EC  RK C++ S+   M  L H+ I+
Sbjct: 524 ELEQKTVHDASSNEALGQLGETVNAKECIERKLCSSYSLGRDMLGLKHDSIL 575


>09_02_0559 +
           10666974-10667078,10667251-10667614,10671204-10671541,
           10671701-10671706,10672019-10672255
          Length = 349

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 462 HLLTEIQHVTSYCKKLRQVQISSKIDRNNG 551
           H++ ++ H+ S+C  LR  ++   I  N G
Sbjct: 221 HVVVQLAHIKSFCSLLRNTEVKLNIPNNKG 250


>06_03_1121 +
           27767707-27768065,27768612-27769034,27770013-27770175,
           27770271-27770381,27770895-27770963,27771117-27771203,
           27771967-27772752
          Length = 665

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 690 NTNNTTRSMTSGSSKQANKKASKFPRG 770
           NTN+  +S+ +GSS QA + A+  P+G
Sbjct: 232 NTNDQVQSVPNGSSNQATRIATPLPQG 258


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 296 DQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 400
           D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 525 DMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>02_01_0700 +
           5229681-5229719,5230235-5230334,5230406-5230463,
           5230542-5230898,5230991-5231088,5232054-5232144,
           5232183-5232243
          Length = 267

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +3

Query: 339 AYVSRVITSLLPRWKI*ATKKSSHLTFWLMLPSLTVDFITWHLLTEIQHVTSYCKKLRQV 518
           A ++  +TS+    K+ AT ++  +T  + L  +T      +    +  VTS+C+ L  +
Sbjct: 127 AQITVTVTSVSKMTKLHATNEAVPITPAIQLVEITAPAAADNYNDVVSAVTSFCEYLAPL 186

Query: 519 QISSKIDRNNGSVMTSG 569
              SK   + G V T+G
Sbjct: 187 LHLSKPGNSTGIVPTAG 203


>04_04_1221 + 31845938-31847038
          Length = 366

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 787 DGSIFFPRGNLLAFLFACLLEPEVIERVVLLVLN*VDSKISATIHRLM 644
           DGS     GN  AFL+ C  E EV  R  L +L   D K+S   +  M
Sbjct: 72  DGSTVTCLGNASAFLYYCGREKEVRTRFTLNLLG-KDGKLSQVTNSYM 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,472,548
Number of Sequences: 37544
Number of extensions: 363242
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)