Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E04
         (800 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr...    47   3e-05
BT004893-1|AAO47871.1|  541|Drosophila melanogaster RE51884p pro...    29   9.8  
AY069079-1|AAL39224.1|  541|Drosophila melanogaster GH09383p pro...    29   9.8  
AE014297-3582|AAN14008.1|  541|Drosophila melanogaster CG6668-PB...    29   9.8  
AE014297-3581|AAF56318.1|  541|Drosophila melanogaster CG6668-PA...    29   9.8  

>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
           protein.
          Length = 1053

 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 302 NTSSGTPQERECSIRKSCNNVS--VTSMEDLSHEEIVTSYVLAHVAQFDCRLHHMAFTNG 475
           N  +  P   EC    +   V+   T   ++  EEI  + VLAH+A  D RL  + FT+ 
Sbjct: 111 NLLNSRPTAAECYAVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDSRLQRVLFTSN 170

Query: 476 NTTRNKLLQEIKASANLK*NRSQ*WICHDEWVVPTRIVFKPMTTARVTWH*YSKPGHESV 655
             TR+KL  E+KA    K   ++     D+ + P +   K    + V  H  SKPG    
Sbjct: 171 VRTRSKLQAELKAFTFDKKRHAR-----DDNLGPDQ---KNRKASPVVCHFCSKPGRRIA 222

Query: 656 NCR*NFR 676
            CR   R
Sbjct: 223 ECRSKMR 229


>BT004893-1|AAO47871.1|  541|Drosophila melanogaster RE51884p
           protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 481 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 380
           C +V     M S+V++ N+SQN++ DD    Q+F
Sbjct: 135 CATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLF 168


>AY069079-1|AAL39224.1|  541|Drosophila melanogaster GH09383p
           protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 481 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 380
           C +V     M S+V++ N+SQN++ DD    Q+F
Sbjct: 135 CATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLF 168


>AE014297-3582|AAN14008.1|  541|Drosophila melanogaster CG6668-PB,
           isoform B protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 481 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 380
           C +V     M S+V++ N+SQN++ DD    Q+F
Sbjct: 135 CATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLF 168


>AE014297-3581|AAF56318.1|  541|Drosophila melanogaster CG6668-PA,
           isoform A protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 481 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 380
           C +V     M S+V++ N+SQN++ DD    Q+F
Sbjct: 135 CATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLF 168


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,322,202
Number of Sequences: 53049
Number of extensions: 643778
Number of successful extensions: 1445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)