Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_E03
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.051
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.83 
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   2.5  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 19/66 (28%), Positives = 20/66 (30%)
 Frame = +3

Query: 378 PXPGXXDPXXXXPPPPGXPSXXPXPXGVXXPXXXSXPGXXXXXGPXPEXAPPPXXAGGXQ 557
           P P         P P   P   P P     P     PG      P P   PP   AGG +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791

Query: 558 XXXPXP 575
              P P
Sbjct: 792 YYAPAP 797



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
 Frame = +2

Query: 590 APRP-PXPXXXXXGXXXRXGXXGRXGXAPPPXXPPVXXXGRSXXPSXGPTPRAE 748
           AP P P P     G        G  G  PPP  PP             P P+AE
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAE 800



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 414 PPPPGXPSXXPXPXGVXXPXXXSXPGXXXXXGPXPEXAPPP 536
           PPPPG     P P     P   +  G      P P+  P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSA--GGSRYYAPAPQAEPEP 803


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 29/113 (25%), Positives = 29/113 (25%), Gaps = 7/113 (6%)
 Frame = +2

Query: 527 PPPPLRXGXTXXGARXXXWXXAPRPPXPXXXXXGXXXRXGXXGRXGXAPPPXXPPVXXXG 706
           PPP  R       A        P PP P     G              PPP  P     G
Sbjct: 293 PPPSSRVSAAALAANKKR---PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349

Query: 707 RSXXPSXG-----PTPRAEXPXXGXXCPXXSPPR--XXPXAXPAXXXXXGXPA 844
               P  G     P P    P  G   P  S  R    P A P        PA
Sbjct: 350 SIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 180 GGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDPLKLS 13
           GG S  +   +++ + D  +     A+   + +  N +KNNI   H  T++P K S
Sbjct: 31  GGSSELHTYMNDTSLADIPLFEDTLASEVSSSLISNPSKNNIQHLHPNTSEPFKTS 86


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 162 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 64
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
 Frame = +3

Query: 354 PXKAXXXXPXPGXXDPXXXXPPPPGXPSXXPXPXGVXXPXXX--SXPGXXXXXGPXPEXA 527
           P +     P P    P     PP   PS  P P     P     S P       P P   
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPP--IPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKV 201

Query: 528 PPP 536
           PPP
Sbjct: 202 PPP 204



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
 Frame = +3

Query: 345 GGFPXKAXXXXPXPGXXDPXXXXPPPPGX----PSXXPXPXGVXXPXXXSXPGXXXXXGP 512
           GG P              P    PP P      P+  P    +  P   S P       P
Sbjct: 107 GGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166

Query: 513 XPEXAPPP 536
            P   PPP
Sbjct: 167 IPSSLPPP 174


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
 Frame = -3

Query: 548 PXXXGG-GGALXXRXRXXXXXGXGGXPWXXNXPXGGXXGGXXR-XXGXXXXGVPPPGXXG 375
           P   GG GG            G GG P       GG  GG      G    G  P G  G
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263

Query: 374 XPXGFXG 354
            P G  G
Sbjct: 264 GPGGHGG 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,271
Number of Sequences: 5004
Number of extensions: 39908
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)