Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_E02
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 255 3e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 252 2e-67
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 31 1.4
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.5
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.3
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.3
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.3
10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430 28 9.7
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 9.7
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 255 bits (625), Expect = 3e-68
Identities = 120/195 (61%), Positives = 149/195 (76%), Gaps = 1/195 (0%)
Frame = +1
Query: 52 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 231
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 232 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 411
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 412 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 591
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 592 LLAREVLRLRG-VLP 633
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +2
Query: 632 PGDQRWDVVVDLFFYRDPEESEKDEQQA 715
PG +WDV+VDLFFYRDPEE+++ E++A
Sbjct: 195 PG-HKWDVMVDLFFYRDPEEAKEQEEEA 221
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 252 bits (617), Expect = 2e-67
Identities = 117/184 (63%), Positives = 143/184 (77%), Gaps = 1/184 (0%)
Frame = +1
Query: 85 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 264
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 624
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 625 -VLP 633
+LP
Sbjct: 192 TILP 195
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 632 PGDQRWDVVVDLFFYRDPEES-EKDEQQAKEXGCGYQLNXKVXAPVHEXW 778
PG +WDV+VDLFFYRDPEE+ E++E++A Y + AP + W
Sbjct: 195 PG-HKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTW 243
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 669 NKSTTTSQRWSPGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 547
N S+T+S WS K T KP FT P + + + AW
Sbjct: 321 NSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 152 TFSAPRWVVAASILVTSSSLRASTSNP 72
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 334 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 179
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 159 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 266
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 105 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 284
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 285 VRHLITALRSACCTEVCR 338
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430
Length = 156
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 671 RTNQPQHPSAGHRGSTPRSLSTSRANNHHIKP 576
+T Q +H +A R PR+ +TS+ + IKP
Sbjct: 66 QTQQVRHFAAKDRSRAPRTPTTSKVKKYKIKP 97
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 162 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 341
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 342 HRC 350
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 195 WYPCDQLASYLGKTCSGCSCCRSHREP 275
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,663,842
Number of Sequences: 37544
Number of extensions: 590687
Number of successful extensions: 1585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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