Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D22
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.089
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -2

Query: 446 GGGPPPPXXGGXPPPXXXGGGXPPP 372
           GG PPPP     PPP   G G PPP
Sbjct: 759 GGPPPPP-----PPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = -1

Query: 438 PPPPXXGXXXPPPXXXG-GXPPPXXXKGGXPPKKKXP 331
           PPPP      P P       PPP    GG PP    P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 376 GGXPPPXXXGGGXPPXXGGGGPPP 447
           GG PPP       PP   G GPPP
Sbjct: 759 GGPPPPPP-----PPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = -1

Query: 471 PXXKXIXXGGGPPPPXXG--XXXPPPXXXGGXPPPXXXKGG 355
           P    I  G  PPPP  G     PPP      PPP    GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP---PPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -1

Query: 507 PPPXXXXXXXXXPXXKXIXXGGGPPPPXXGXXXPPPXXXGG 385
           PPP         P       G GPPPP      PPP    G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP----PPPPPAVSAG 788



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 434 PPPXXGGXPPPXXXGGGXPPPXXKKG 357
           P P     PPP    GG PPP    G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = -1

Query: 444  GGPPPPXXGXXXPP-PXXXGGXPPPXXXKGGXPP 346
            G PP P      PP P    G PP      G PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -2

Query: 437  PPPPXXGGXPPPXXXGGGXPPPXXKKGXPPXKK 339
            PP P   G PP        PP     G PP  K
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -2

Query: 437  PPPPXXGGXPPPXXXGGGXPPPXXKKGXPPXKK 339
            PP P   G PP        PP     G PP  K
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = -2

Query: 437  PPPPXXGGXPPPXXXGGGXPP-PXXKKGXPPXKK 339
            PP P   G PP        PP P    G PP  K
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -1

Query: 444  GGPPPPXXGXXXPPPXXXGGXPPPXXXKGGXPP 346
            G PP P      PP     G PP        PP
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -1

Query: 444  GGPPPPXXGXXXPPPXXXGGXPPPXXXKGGXPP 346
            G PP P      PP     G PP        PP
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 446 GGGPPPPXXGGXPPPXXXGGGXPPPXXKK 360
           G  PPPP   G  PP       PP   KK
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -2

Query: 443 GGPPPPXXGGXPPPXXXGGGXPPPXXKKGXPPXKK 339
           G PPPP     PPP       PPP    G    +K
Sbjct: 7   GNPPPPP----PPPGFEPPSQPPPPPPPGYVKKRK 37


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 438 PPPPXXGXXXPPPXXXGGXPPP 373
           PPPP  G    PP   G   PP
Sbjct: 926 PPPPKVGETYHPPTASGTRVPP 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,468
Number of Sequences: 5004
Number of extensions: 33001
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)