Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D19
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   4.1  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   7.1  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   7.1  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   7.1  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.1  

>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 269 FAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS-SLLEDTPS 400
           + +YQ  H HL +  +  R  +H+F+   A AL +S  LL D+ S
Sbjct: 321 YELYQ--HSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTS 363


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 98  NVTT*LRAGKKRI*MDPLLDASL 166
           NV T L   K+R+ +DPL+D SL
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISL 293


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 212 WESERGEDDLAKIGVGALDFAVYQSRHKHLT 304
           W+SE  EDD+  +GV      ++    K +T
Sbjct: 63  WDSEENEDDITDVGVPGSHEIMFPGHSKIVT 93


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 170 PLRTHPIKDPFKFFFSQHEVMLLRFQKNSVNVIMIEKKPIQ*SSEMATNE 21
           P   HPI  P     SQH+    + +K +V  I+  K P   SS  A ++
Sbjct: 101 PRPMHPISHPL----SQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQ 146


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 600 LCQRTLSIIPDAVXLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGIN 451
           +  R++S+ P     I+ P ISS    L KK  +  + +TF + +N  +N
Sbjct: 73  IMNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,486
Number of Sequences: 5004
Number of extensions: 56474
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)