Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D19
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    29   4.3  
11_01_0114 - 886404-887111                                             29   5.6  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    28   9.8  

>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 471 VSNGGINAYKLSSGXRVSVPLVDDEGVSSSKEESNKAPASLAM 343
           ++ G +   + +SG   S+  VDD GVSS+ EE  +A A+LA+
Sbjct: 114 INMGLLVGRRRNSGSEESI--VDDGGVSSNDEEHREAKAALAV 154


>11_01_0114 - 886404-887111
          Length = 235

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 392 TPSSSTNGTXTLXPEDNLYALMPPFETFLNVDKTARLR 505
           T +++ NG+ ++ P   + A  PPF T  + D  +R R
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRR 42


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 386 EDTPSSSTNGTXTLXPEDNLYALMPPFETFL 478
           + T SS+ N      PEDNL A +PP  T L
Sbjct: 428 QGTSSSNVNAFIKKYPEDNLLARLPPSLTRL 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,487,900
Number of Sequences: 37544
Number of extensions: 338637
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)