Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D19
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    29   3.8  
Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 221 ERGEDDLAKIGVGALDFAVYQSRH-KHLTFQDRSKRLKLHQFIAKEAGALFDSSLLEDTP 397
           + GEDD+ ++        +Y   H KHL F D +   K  +  +++A    DSS+L   P
Sbjct: 165 DTGEDDVYRVAF------IYDDDHGKHLQFSDLNMHDKEFRTYSRQASIAADSSVLIPVP 218

Query: 398 SSSTNGTXTLXPEDNLY 448
             +  G   L     LY
Sbjct: 219 -HAIGGVIVLGSNSVLY 234


>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 604 PAVPKNLKHHPXRSXVDY 551
           PA+PK+ K HP R  V+Y
Sbjct: 78  PAIPKDFKEHPDRDLVNY 95


>Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical
           protein F15D3.7 protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 218 SERGEDDLAKIGVGALDFAVYQSRH 292
           S R ED+L   G GAL  A+Y+S H
Sbjct: 181 SVRAEDELNGFGAGALTGAIYRSPH 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,811
Number of Sequences: 27780
Number of extensions: 308559
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)