Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D16
         (1058 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = +3

Query: 882  SXPPXPXXKKXKXPNXPFSPXPXXXGXGPPXXXSPGGGXXXXP 1010
            S  P P     + P  P    P     GPP    PG      P
Sbjct: 18   SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 469 PXXTPPPGGXXPXPP 425
           P   PPPGG    PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 699 FXXXXPXPPPPPXXXG 746
           F    P PPPPP   G
Sbjct: 369 FDLDEPLPPPPPIRGG 384


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 888 PPXPXXKKXKXPNXPFSPXP 947
           PP P  +  K P+ P  P P
Sbjct: 638 PPLPPKRIRKMPSMPLLPRP 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.154    0.560 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,619
Number of Sequences: 438
Number of extensions: 7642
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35306793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)