Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D14
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    33   0.063
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   0.78 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    29   1.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.2  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    26   5.5  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    26   5.5  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   9.6  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
 Frame = +3

Query: 66  KFXQSSD-YERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAA 242
           KF  S + Y+ AL  A + +  +P+E   + C    +L L +FK AL  L +        
Sbjct: 313 KFLISKERYDLALICAKRAVHASPSEFATWACLADVYLHLEDFKSALLALNSCPMYTYYE 372

Query: 243 DLLF-----EKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQILYRL 374
              +      +A+  + +N PKE L+  ++A        E+    L RL
Sbjct: 373 RDAYPLPPSARAHLPFPVNFPKEELEVENNAQNGYTVSTEITDPYLARL 421


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 143 ESISLQSGMLSPTPQLQGGSSDINQCQE 226
           E++ L +G L P P+ + G SDIN+ +E
Sbjct: 901 EALDLINGFLQPNPERRLGFSDINEIKE 928


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = +3

Query: 363 LYRLXQYQDCYNLYRDLLKNTTDEYEDERKXXXXXXXXXXXXXXPTSELPQXDENTYELA 542
           L+R   YQD Y  Y + L+   D  E   K              P   L   D N   + 
Sbjct: 233 LFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSD-NALAID 291

Query: 543 YNSGSTLAMRGKYNEALSVLKES 611
            +    L +R K +EAL   +E+
Sbjct: 292 SSYLKGLKVRAKAHEALEKWEEA 314


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 351 RAQILYRLXQYQDCYNLYRDLL 416
           +AQ+L +L +YQ+  N+++DL+
Sbjct: 506 KAQVLEQLEKYQESLNIWKDLI 527


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 75  QSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNA 221
           +S DY  A+  A K ++  P   KA+  +    + +   KEA+     A
Sbjct: 51  KSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKA 99


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 495 PTSELPQXDENTYELAYNSGSTL 563
           PT EL Q +ENTY++   S S++
Sbjct: 98  PTVELKQENENTYQIREESTSSV 120


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 555 STLAMRGKYNEALSVLKESRTS 620
           ST+AMR K    +SVL+E R S
Sbjct: 62  STIAMRSKQKAIISVLEEFRDS 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,218
Number of Sequences: 5004
Number of extensions: 50406
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)