Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_D13
(832 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 31 0.017
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 28 0.12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.21
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.28
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.28
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.28
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.37
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.65
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.65
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.65
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.6
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 4.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 110 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 274
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 275 MNWIDKRLSWNA 310
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 116 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 283
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 284 IDKRLSWNAG 313
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 30.7 bits (66), Expect = 0.017
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +2
Query: 137 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 295
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 296 LSWNAGGVGLQHL 334
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.12
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 137 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 295
++D++L YD P D VV + + +R + I + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 296 LSWNAGGVGLQHL 334
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.21
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 321 GCSTWLVSSERLWRPDVVLLN 383
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.28
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 22.2 bits (45), Expect = 6.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 318 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 226
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.28
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 22.2 bits (45), Expect = 6.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 318 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 226
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.6 bits (56), Expect = 0.28
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
V S+ +WRPD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.37
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 315 EWGCSTWL-VSSERLWRPDVVLLN 383
E+G T L V SE +W PD+VL N
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.49
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 188 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNA---GGVGLQHL 334
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
Score = 23.4 bits (48), Expect = 2.6
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +3
Query: 348 ERLWRPDVVLLN 383
+++W+PD+VL N
Sbjct: 106 DKVWKPDIVLFN 117
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 131 ITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 227 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 322
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.6 bits (46), Expect = 4.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
++ +LW+PD+++ N
Sbjct: 131 ITPNKLWKPDILMYN 145
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.65
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 321 GCSTWLVSSERLWRPDVVLLN 383
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 339 VSSERLWRPDVVLLN 383
+ RLW+PDV++ N
Sbjct: 100 IPPHRLWKPDVLMYN 114
Score = 22.2 bits (45), Expect = 6.0
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +2
Query: 89 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 253
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 254 RIQADLQMNWIDKRLSWNAGGVG 322
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 188 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHLAGVL----GTL 355
+ ++N L + + + ++ + D + N + + S AGGV + AG++ GTL
Sbjct: 239 RAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMCQPVGTL 298
Query: 356 V 358
+
Sbjct: 299 I 299
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = -2
Query: 633 SXXPNPTXKPRXXTQKPAXPGPPXXHPXAPEXXPXQVXXLXGPXCVTXIP-XGVLXSKRF 457
S P P P Q P PP P P P + P G+ ++
Sbjct: 18 SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQL 77
Query: 456 MQE 448
+Q+
Sbjct: 78 LQQ 80
Score = 21.8 bits (44), Expect = 8.0
Identities = 11/36 (30%), Positives = 13/36 (36%)
Frame = -2
Query: 660 PXPGXNPXGSXXPNPTXKPRXXTQKPAXPGPPXXHP 553
P P +P S P +Q P GPP P
Sbjct: 21 PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 348 ERLWRPDVVLLN 383
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,965
Number of Sequences: 438
Number of extensions: 4341
Number of successful extensions: 37
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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