Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D11
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   269   4e-73
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   268   5e-73
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    27   2.7  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   4.7  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.2  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   8.2  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   8.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  269 bits (659), Expect = 4e-73
 Identities = 122/205 (59%), Positives = 155/205 (75%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSH  F  PRHGSLG  P+KR+ R RG VKAFPK   SKPVHL AF+GYKAGM H+V + 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 436 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 615
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 616 MEIQLNGGTIEDKVKWTREHLEKPI 690
           MEIQ+NGG++ DKV+W REH EK +
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTV 203



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 38/63 (60%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*KHKGLRKVACIGXWHLLRVSFTV 874
           + S F Q+EMID IGVT+GKG +        K      H+GLRKVACIG WH   V +TV
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264

Query: 875 TRA 883
            RA
Sbjct: 265 ARA 267


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  268 bits (658), Expect = 5e-73
 Identities = 121/205 (59%), Positives = 155/205 (75%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSH  F  PRHGSLG  P+KR+ R RG VKAFPK   SKPVHL AF+GYKAGM H+V + 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 436 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 615
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 616 MEIQLNGGTIEDKVKWTREHLEKPI 690
           MEIQ+NGG++ DKV+W REH EK +
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTV 203



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 38/63 (60%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*KHKGLRKVACIGXWHLLRVSFTV 874
           + S F Q+EMID IGVT+GKG +        K      H+GLRKVACIG WH   V +TV
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264

Query: 875 TRA 883
            RA
Sbjct: 265 ARA 267


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 616 MEIQLNGGTIEDKVKWTREH 675
           M +Q  G TI    KWTREH
Sbjct: 46  MPVQYKGQTISASHKWTREH 65


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 586 LKQRQKKA--HIMEIQLNGGTIEDKVKWTREHLEKPI 690
           LKQ+   A  +I +I++NGG +  ++  T+ HL K +
Sbjct: 96  LKQKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKL 132


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 22  PRRTVGLPGMFVCSLSSSMSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKP 195
           P   VG PG  +   SSS S+ + S    GSL  +       +   V +  +  PS P
Sbjct: 23  PPGDVGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREIPSDP 80


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 544 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 654
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 350 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 502
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 234 HTGLITDKSXQMNRFARGGFRERLDLTTMTTGPLFG 127
           H+G I      +    R GF   LDLT  T G L G
Sbjct: 149 HSGTIAQWRDTIEEIHRRGFYLVLDLTISTLGDLIG 184


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 781 QREVTPFVSFALGDTNAVNHFILXKHR 701
           QR V P + FA+G    + HF + K++
Sbjct: 161 QRTVPPIMPFAMGTLGFLTHFDVKKYK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,689,255
Number of Sequences: 5004
Number of extensions: 76212
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)