Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D11
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   258   3e-69
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   256   2e-68
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.2  
01_05_0125 - 18382402-18382761,18382863-18383036                       28   8.7  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  258 bits (633), Expect = 3e-69
 Identities = 119/207 (57%), Positives = 152/207 (73%), Gaps = 1/207 (0%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSHR F  PRHGSLG  P+KRS RHRG VK+FPK   SKP HL +F+GYKAGM H+V E 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 436 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 612
           NW              +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180

Query: 613 IMEIQLNGGTIEDKVKWTREHLEKPIP 693
           +MEIQ+NGGTI DKV +  +  EK IP
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIP 207



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 37/63 (58%), Positives = 42/63 (66%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*KHKGLRKVACIGXWHLLRVSFTV 874
           VD+VF +DEMID IGVTKGKGY+               H+GLRKVACIG WH  RVS+TV
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267

Query: 875 TRA 883
            RA
Sbjct: 268 ARA 270


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  256 bits (626), Expect = 2e-68
 Identities = 118/207 (57%), Positives = 151/207 (72%), Gaps = 1/207 (0%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSHR F  PRHGSLG  P+KRS RHRG VK+FPK   +KP HL +F+GYKAGM H+V E 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 436 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 612
           NW              +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180

Query: 613 IMEIQLNGGTIEDKVKWTREHLEKPIP 693
           +MEIQ+NGGTI DKV +  +  EK IP
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIP 207



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 37/63 (58%), Positives = 42/63 (66%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*KHKGLRKVACIGXWHLLRVSFTV 874
           VD+VF +DEMID IGVTKGKGY+               H+GLRKVACIG WH  RVS+TV
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267

Query: 875 TRA 883
            RA
Sbjct: 268 ARA 270


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 510 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 626
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 424 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 320
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,366,358
Number of Sequences: 37544
Number of extensions: 545104
Number of successful extensions: 1355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)